- PDB-3vht: Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in comp... -
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基本情報
登録情報
データベース: PDB / ID: 3vht
タイトル
Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
要素
Green fluorescent protein
Green fluorescent protein,ATPase WRNIP1
Ubiquitin
キーワード
FLUORESCENT PROTEIN/PROTEIN BINDING / GREEN FLUORESCENT PROTEIN / FUSION PROTEIN / ZINC FINGER / UBIQUITIN-BINDING DOMAIN / FLUORESCENT PROTEIN-PROTEIN BINDING complex
機能・相同性
機能・相同性情報
Formation of the ternary complex, and subsequently, the 43S complex / APC/C:Cdc20 mediated degradation of Cyclin B / SCF-beta-TrCP mediated degradation of Emi1 / APC-Cdc20 mediated degradation of Nek2A / ER Quality Control Compartment (ERQC) / Regulation of PTEN localization / Regulation of pyruvate metabolism / Downregulation of ERBB2:ERBB3 signaling / IRAK2 mediated activation of TAK1 complex / SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription ...Formation of the ternary complex, and subsequently, the 43S complex / APC/C:Cdc20 mediated degradation of Cyclin B / SCF-beta-TrCP mediated degradation of Emi1 / APC-Cdc20 mediated degradation of Nek2A / ER Quality Control Compartment (ERQC) / Regulation of PTEN localization / Regulation of pyruvate metabolism / Downregulation of ERBB2:ERBB3 signaling / IRAK2 mediated activation of TAK1 complex / SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription / PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1 / Gap-filling DNA repair synthesis and ligation in GG-NER / Fanconi Anemia Pathway / Endosomal Sorting Complex Required For Transport (ESCRT) / Negative regulation of FLT3 / Synthesis of active ubiquitin: roles of E1 and E2 enzymes / Regulation of expression of SLITs and ROBOs / IRAK1 recruits IKK complex / IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation / Downregulation of ERBB4 signaling / E3 ubiquitin ligases ubiquitinate target proteins / Downregulation of TGF-beta receptor signaling / TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) / Stabilization of p53 / NOTCH3 Activation and Transmission of Signal to the Nucleus / Negative regulators of DDX58/IFIH1 signaling / Alpha-protein kinase 1 signaling pathway / Pexophagy / JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 / Translesion synthesis by REV1 / Downregulation of SMAD2/3:SMAD4 transcriptional activity / Negative regulation of FGFR3 signaling / Negative regulation of FGFR4 signaling / Translesion synthesis by POLK / Regulation of NF-kappa B signaling / Negative regulation of FGFR1 signaling / Negative regulation of FGFR2 signaling / Regulation of TP53 Activity through Methylation / Formation of a pool of free 40S subunits / NRIF signals cell death from the nucleus / Translesion synthesis by POLI / Regulation of BACH1 activity / Recognition of DNA damage by PCNA-containing replication complex / p75NTR recruits signalling complexes / Interferon alpha/beta signaling / Negative regulation of MAPK pathway / Spry regulation of FGF signaling / SRP-dependent cotranslational protein targeting to membrane / Regulation of TP53 Degradation / Translesion Synthesis by POLH / Activated NOTCH1 Transmits Signal to the Nucleus / Formation of TC-NER Pre-Incision Complex / Major pathway of rRNA processing in the nucleolus and cytosol / Negative regulation of MET activity / TRAF6-mediated induction of TAK1 complex within TLR4 complex / IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation / Termination of translesion DNA synthesis / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Autodegradation of Cdh1 by Cdh1:APC/C / APC/C:Cdc20 mediated degradation of Securin / Senescence-Associated Secretory Phenotype (SASP) / Josephin domain DUBs / DNA Damage Recognition in GG-NER / Dual Incision in GG-NER / Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A / Ubiquitin-dependent degradation of Cyclin D / Regulation of TBK1, IKKε (IKBKE)-mediated activation of IRF3, IRF7 / AUF1 (hnRNP D0) binds and destabilizes mRNA / TNFR1-induced NF-kappa-B signaling pathway / Downregulation of ERBB2 signaling / Dual incision in TC-NER / Oncogene Induced Senescence / PINK1-PRKN Mediated Mitophagy / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / Cdc20:Phospho-APC/C mediated degradation of Cyclin A / SCF(Skp2)-mediated degradation of p27/p21 / N-glycan trimming in the ER and Calnexin/Calreticulin cycle / Assembly of the pre-replicative complex / CDK-mediated phosphorylation and removal of Cdc6 / HDR through Homologous Recombination (HRR) / Gap-filling DNA repair synthesis and ligation in TC-NER / Inactivation of CSF3 (G-CSF) signaling / TCF dependent signaling in response to WNT / Metalloprotease DUBs / Formation of Incision Complex in GG-NER / Activation of IRF3, IRF7 mediated by TBK1, IKKε (IKBKE) / EGFR downregulation / Translation initiation complex formation / Ribosomal scanning and start codon recognition / translation at postsynapse / Autodegradation of the E3 ubiquitin ligase COP1 / Regulation of TNFR1 signaling / MAP3K8 (TPL2)-dependent MAPK1/3 activation / G2/M Checkpoints / Degradation of AXIN / Regulation of FZD by ubiquitination / APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 / Asymmetric localization of PCP proteins / Regulation of RUNX3 expression and activity / Regulation of RAS by GAPs 類似検索 - 分子機能
WRNIP1, ubiquitin-binding domain / Werner helicase-interacting protein 1 ubiquitin-binding domain / MgsA AAA+ ATPase C-terminal / AAA C-terminal domain / : / MgsA AAA+ ATPase C terminal / AAA C-terminal domain / Rad18-like CCHC zinc finger / DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal / Classic Zinc Finger ...WRNIP1, ubiquitin-binding domain / Werner helicase-interacting protein 1 ubiquitin-binding domain / MgsA AAA+ ATPase C-terminal / AAA C-terminal domain / : / MgsA AAA+ ATPase C terminal / AAA C-terminal domain / Rad18-like CCHC zinc finger / DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal / Classic Zinc Finger / Rad18, zinc finger UBZ4-type / Zinc finger UBZ4-type profile. / Green Fluorescent Protein / Green fluorescent protein / Double Stranded RNA Binding Domain / S27a-like superfamily / Ribosomal protein S27a / Ribosomal protein S27a / Ribosomal protein S27a / Green fluorescent protein, GFP / Green fluorescent protein-related / Green fluorescent protein / Green fluorescent protein / Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 / ATPase family associated with various cellular activities (AAA) / : / ATPase, AAA-type, core / Ubiquitin domain / Ubiquitin domain signature. / Ubiquitin conserved site / Ubiquitin-like (UB roll) / Ubiquitin family / Ubiquitin homologues / Ubiquitin domain profile. / Ubiquitin-like domain / Zinc-binding ribosomal protein / Ubiquitin-like domain superfamily / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Roll / Beta Barrel / P-loop containing nucleoside triphosphate hydrolase / 2-Layer Sandwich / Mainly Beta / Alpha Beta 類似検索 - ドメイン・相同性
Green fluorescent protein / Ubiquitin-ribosomal protein eS31 fusion protein / ATPase WRNIP1 類似検索 - 構成要素
生物種
Aequorea victoria (オワンクラゲ) Homo sapiens (ヒト) Mus musculus (ハツカネズミ)
(1) THE SEQUENCE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN NOT CURRENTLY EXIST IN UNIPROT. THIS ...(1) THE SEQUENCE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN NOT CURRENTLY EXIST IN UNIPROT. THIS SEQUENCE IS FOUND IN GENBANK WITH ACCESSION CODE: ABI82055. (2) IN THE CHAIN A, RESIDUES -2, -1, 0, 231, 232 ARE EXPRESSION TAGS. (3) THE CHAIN B IS FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN (RESIDUES 1-230), LINKER (GLY-SER) AND HUMAN WRNIP1 (RESIDUES 9-46). RESIDUES -2, -1, 0 ARE EXPRESSION TAGS.