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- PDB-3u8n: Crystal structure of the acetylcholine binding protein (AChBP) fr... -

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基本情報

登録情報
データベース: PDB / ID: 3u8n
タイトルCrystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3950 (1-(6-bromo-5-ethoxypyridin-3-yl)-1,4-diazepane)
要素Acetylcholine-binding protein
キーワードAcetylcholine-binding protein/agonist / Lymnaea stagnalis / agonist (アゴニスト) / Ligand-bindig domain / Acetylcholine (アセチルコリン) / Acetylcholine-binding protein / Acetylcholine-binding protein-agonist complex
機能・相同性
機能・相同性情報


acetylcholine receptor activity / acetylcholine-gated monoatomic cation-selective channel activity / synaptic cleft / response to nicotine / neuron projection / シナプス / 生体膜
類似検索 - 分子機能
Acetylcholine Binding Protein; Chain: A, / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel ligand-binding domain superfamily / Neurotransmitter-gated ion-channel ligand binding domain / Distorted Sandwich / Ig-like domain profile. / Immunoglobulin-like domain / Mainly Beta
類似検索 - ドメイン・相同性
1-(6-bromo-5-ethoxypyridin-3-yl)-1,4-diazepane / Acetylcholine-binding protein
類似検索 - 構成要素
生物種Lymnaea stagnalis (無脊椎動物)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.35 Å
データ登録者Rohde, L.A.H. / Ahring, P.K. / Jensen, M.L. / Nielsen, E.O. / Peters, D. / Helgstrand, C. / Krintel, C. / Harpsoe, K. / Gajhede, M. / Kastrup, J.S. / Balle, T.
引用ジャーナル: J.Biol.Chem. / : 2012
タイトル: Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
著者: Rohde, L.A. / Ahring, P.K. / Jensen, M.L. / Nielsen, E. / Peters, D. / Helgstrand, C. / Krintel, C. / Harpse, K. / Gajhede, M. / Kastrup, J.S. / Balle, T.
履歴
登録2011年10月17日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02011年12月14日Provider: repository / タイプ: Initial release
改定 1.12013年9月18日Group: Database references
改定 1.22018年1月24日Group: Data collection / Structure summary / カテゴリ: audit_author / diffrn_source
Item: _audit_author.name / _diffrn_source.pdbx_synchrotron_site
改定 1.32020年7月29日Group: Data collection / Derived calculations / Structure summary
カテゴリ: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_site / struct_site_gen
Item: _chem_comp.name / _chem_comp.type ..._chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role
解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation
改定 1.42023年9月13日Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Acetylcholine-binding protein
B: Acetylcholine-binding protein
C: Acetylcholine-binding protein
D: Acetylcholine-binding protein
E: Acetylcholine-binding protein
F: Acetylcholine-binding protein
G: Acetylcholine-binding protein
H: Acetylcholine-binding protein
I: Acetylcholine-binding protein
J: Acetylcholine-binding protein
K: Acetylcholine-binding protein
L: Acetylcholine-binding protein
M: Acetylcholine-binding protein
N: Acetylcholine-binding protein
O: Acetylcholine-binding protein
P: Acetylcholine-binding protein
Q: Acetylcholine-binding protein
R: Acetylcholine-binding protein
S: Acetylcholine-binding protein
T: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)484,49449
ポリマ-477,25020
非ポリマー7,24429
32,8771825
1
A: Acetylcholine-binding protein
B: Acetylcholine-binding protein
C: Acetylcholine-binding protein
D: Acetylcholine-binding protein
E: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)121,13112
ポリマ-119,3135
非ポリマー1,8187
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area14090 Å2
ΔGint-66 kcal/mol
Surface area42110 Å2
手法PISA
2
F: Acetylcholine-binding protein
G: Acetylcholine-binding protein
H: Acetylcholine-binding protein
I: Acetylcholine-binding protein
J: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)121,13112
ポリマ-119,3135
非ポリマー1,8187
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area13900 Å2
ΔGint-63 kcal/mol
Surface area42250 Å2
手法PISA
3
K: Acetylcholine-binding protein
L: Acetylcholine-binding protein
M: Acetylcholine-binding protein
N: Acetylcholine-binding protein
O: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)120,91011
ポリマ-119,3135
非ポリマー1,5976
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area13810 Å2
ΔGint-67 kcal/mol
Surface area41670 Å2
手法PISA
4
P: Acetylcholine-binding protein
Q: Acetylcholine-binding protein
R: Acetylcholine-binding protein
S: Acetylcholine-binding protein
T: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)121,32314
ポリマ-119,3135
非ポリマー2,0109
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area14430 Å2
ΔGint-93 kcal/mol
Surface area42050 Å2
手法PISA
単位格子
Length a, b, c (Å)239.120, 73.110, 271.840
Angle α, β, γ (deg.)90.00, 97.45, 90.00
Int Tables number5
Space group name H-MC121
非結晶学的対称性 (NCS)NCSドメイン:
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NCSドメイン領域:
Dom-IDComponent-IDEns-IDSelection details
111chain A and resid 1:12
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NCSアンサンブル:
ID
1
2
3
4
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20

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要素

#1: タンパク質
Acetylcholine-binding protein / ACh-binding protein / AchBP


分子量: 23862.523 Da / 分子数: 20 / 由来タイプ: 組換発現 / 由来: (組換発現) Lymnaea stagnalis (無脊椎動物)
発現宿主: Spodoptera frugiperda (ツマジロクサヨトウ)
株 (発現宿主): Sf9 / 参照: UniProt: P58154
#2: 化合物
ChemComp-09S / 1-(6-bromo-5-ethoxypyridin-3-yl)-1,4-diazepane / 1-(5-エトキシ-6-ブロモ-3-ピリジル)ヘキサヒドロ-1H-1,4-ジアゼピン


分子量: 300.195 Da / 分子数: 20 / 由来タイプ: 合成 / : C12H18BrN3O
#3: 化合物
ChemComp-SO4 / SULFATE ION / 硫酸ジアニオン / 硫酸塩


分子量: 96.063 Da / 分子数: 6 / 由来タイプ: 合成 / : SO4
#4: 糖 ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE / N-アセチル-β-D-グルコサミン / N-アセチルグルコサミン


タイプ: D-saccharide, beta linking / 分子量: 221.208 Da / 分子数: 3 / 由来タイプ: 組換発現 / : C8H15NO6
識別子タイププログラム
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0
#5: 水 ChemComp-HOH / water /


分子量: 18.015 Da / 分子数: 1825 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.47 Å3/Da / 溶媒含有率: 50.17 %
結晶化温度: 293 K / pH: 8
詳細: 50mM Tris, 1.9 M Ammonium sulfate, 3% PEG 400, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: MAX II / ビームライン: I911-2 / 波長: 1.038
検出器タイプ: MAR CCD 165 mm / 検出器: CCD / 日付: 2010年3月19日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1.038 Å / 相対比: 1
反射解像度: 2.35→33.19 Å / Num. obs: 185432 / % possible obs: 95.3 % / 冗長度: 3.6 % / Biso Wilson estimate: 25.2 Å2 / Rmerge(I) obs: 0.07 / Rsym value: 0.07 / Net I/σ(I): 12.7
反射 シェル解像度: 2.35→2.48 Å / 冗長度: 3.5 % / Rmerge(I) obs: 0.191 / Mean I/σ(I) obs: 5.7 / Rsym value: 0.191 / % possible all: 82.8

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解析

ソフトウェア
名称バージョン分類
PHASER位相決定
PHENIX(phenix.refine: 1.6.4_486)精密化
MOSFLMデータ削減
SCALAデータスケーリング
精密化構造決定の手法: 分子置換
開始モデル: PDB ENTRY 1UW6: PENTAMER, CHAIN A-E
解像度: 2.35→33.05 Å / SU ML: 0.35 / Isotropic thermal model: Restrained / σ(F): 0 / 位相誤差: 21.78 / 立体化学のターゲット値: MLHL
Rfactor反射数%反射
Rfree0.23 3742 2.02 %
Rwork0.197 --
obs0.198 185370 95.3 %
all-194530 -
溶媒の処理減衰半径: 0.72 Å / VDWプローブ半径: 1 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL / Bsol: 34.29 Å2 / ksol: 0.39 e/Å3
原子変位パラメータBiso mean: 27.2 Å2
Baniso -1Baniso -2Baniso -3
1--8.9971 Å20 Å23.2763 Å2
2--4.1251 Å20 Å2
3---4.872 Å2
精密化ステップサイクル: LAST / 解像度: 2.35→33.05 Å
タンパク質核酸リガンド溶媒全体
原子数32294 0 412 1825 34531
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00833628
X-RAY DIFFRACTIONf_angle_d1.04545822
X-RAY DIFFRACTIONf_dihedral_angle_d13.19712458
X-RAY DIFFRACTIONf_chiral_restr0.0665182
X-RAY DIFFRACTIONf_plane_restr0.0045875
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDタイプRms dev position (Å)
11A104X-RAY DIFFRACTIONPOSITIONAL
12B104X-RAY DIFFRACTIONPOSITIONAL0.034
13C104X-RAY DIFFRACTIONPOSITIONAL0.033
14D104X-RAY DIFFRACTIONPOSITIONAL0.032
15E104X-RAY DIFFRACTIONPOSITIONAL0.032
16F104X-RAY DIFFRACTIONPOSITIONAL0.034
17G104X-RAY DIFFRACTIONPOSITIONAL0.031
18H104X-RAY DIFFRACTIONPOSITIONAL0.033
19I104X-RAY DIFFRACTIONPOSITIONAL0.028
110J104X-RAY DIFFRACTIONPOSITIONAL0.031
111K104X-RAY DIFFRACTIONPOSITIONAL0.032
112L104X-RAY DIFFRACTIONPOSITIONAL0.032
113M104X-RAY DIFFRACTIONPOSITIONAL0.029
114N104X-RAY DIFFRACTIONPOSITIONAL0.033
115O104X-RAY DIFFRACTIONPOSITIONAL0.032
116P104X-RAY DIFFRACTIONPOSITIONAL0.032
117Q104X-RAY DIFFRACTIONPOSITIONAL0.03
118R104X-RAY DIFFRACTIONPOSITIONAL0.03
119S104X-RAY DIFFRACTIONPOSITIONAL0.032
120T104X-RAY DIFFRACTIONPOSITIONAL0.032
21A53X-RAY DIFFRACTIONPOSITIONAL
22B53X-RAY DIFFRACTIONPOSITIONAL0.033
23C53X-RAY DIFFRACTIONPOSITIONAL0.031
24D53X-RAY DIFFRACTIONPOSITIONAL0.033
25E48X-RAY DIFFRACTIONPOSITIONAL0.036
26F53X-RAY DIFFRACTIONPOSITIONAL0.037
27G53X-RAY DIFFRACTIONPOSITIONAL0.032
28H53X-RAY DIFFRACTIONPOSITIONAL0.033
29I53X-RAY DIFFRACTIONPOSITIONAL0.035
210J53X-RAY DIFFRACTIONPOSITIONAL0.032
211K53X-RAY DIFFRACTIONPOSITIONAL0.035
212L53X-RAY DIFFRACTIONPOSITIONAL0.03
213M53X-RAY DIFFRACTIONPOSITIONAL0.034
214N53X-RAY DIFFRACTIONPOSITIONAL0.036
215O53X-RAY DIFFRACTIONPOSITIONAL0.033
216P53X-RAY DIFFRACTIONPOSITIONAL0.037
217Q53X-RAY DIFFRACTIONPOSITIONAL0.043
218R53X-RAY DIFFRACTIONPOSITIONAL0.029
219S53X-RAY DIFFRACTIONPOSITIONAL0.035
220T53X-RAY DIFFRACTIONPOSITIONAL0.036
31A284X-RAY DIFFRACTIONPOSITIONAL
32B284X-RAY DIFFRACTIONPOSITIONAL0.041
33C284X-RAY DIFFRACTIONPOSITIONAL0.042
34D284X-RAY DIFFRACTIONPOSITIONAL0.043
35E284X-RAY DIFFRACTIONPOSITIONAL0.053
36F284X-RAY DIFFRACTIONPOSITIONAL0.048
37G284X-RAY DIFFRACTIONPOSITIONAL0.042
38H284X-RAY DIFFRACTIONPOSITIONAL0.044
39I284X-RAY DIFFRACTIONPOSITIONAL0.044
310J284X-RAY DIFFRACTIONPOSITIONAL0.038
311K284X-RAY DIFFRACTIONPOSITIONAL0.056
312L284X-RAY DIFFRACTIONPOSITIONAL0.042
313M284X-RAY DIFFRACTIONPOSITIONAL0.045
314N284X-RAY DIFFRACTIONPOSITIONAL0.046
315O284X-RAY DIFFRACTIONPOSITIONAL0.042
316P284X-RAY DIFFRACTIONPOSITIONAL0.039
317Q284X-RAY DIFFRACTIONPOSITIONAL0.043
318R284X-RAY DIFFRACTIONPOSITIONAL0.04
319S284X-RAY DIFFRACTIONPOSITIONAL0.044
320T284X-RAY DIFFRACTIONPOSITIONAL0.047
41A11X-RAY DIFFRACTIONPOSITIONAL
42B11X-RAY DIFFRACTIONPOSITIONAL0.02
43C11X-RAY DIFFRACTIONPOSITIONAL0.02
44D11X-RAY DIFFRACTIONPOSITIONAL0.03
45E11X-RAY DIFFRACTIONPOSITIONAL0.016
46F11X-RAY DIFFRACTIONPOSITIONAL0.018
47G11X-RAY DIFFRACTIONPOSITIONAL0.019
48H11X-RAY DIFFRACTIONPOSITIONAL0.034
49I11X-RAY DIFFRACTIONPOSITIONAL0.011
410J11X-RAY DIFFRACTIONPOSITIONAL0.024
411K11X-RAY DIFFRACTIONPOSITIONAL0.022
412L11X-RAY DIFFRACTIONPOSITIONAL0.013
413M11X-RAY DIFFRACTIONPOSITIONAL0.022
414N11X-RAY DIFFRACTIONPOSITIONAL0.033
415O11X-RAY DIFFRACTIONPOSITIONAL0.021
416Q11X-RAY DIFFRACTIONPOSITIONAL0.024
417S11X-RAY DIFFRACTIONPOSITIONAL0.024
418T11X-RAY DIFFRACTIONPOSITIONAL0.016
51P11X-RAY DIFFRACTIONPOSITIONAL
52R11X-RAY DIFFRACTIONPOSITIONAL0.024
61A48X-RAY DIFFRACTIONPOSITIONAL
62B48X-RAY DIFFRACTIONPOSITIONAL0.031
63C48X-RAY DIFFRACTIONPOSITIONAL0.032
64D48X-RAY DIFFRACTIONPOSITIONAL0.036
65E48X-RAY DIFFRACTIONPOSITIONAL0.027
66F48X-RAY DIFFRACTIONPOSITIONAL0.031
67G48X-RAY DIFFRACTIONPOSITIONAL0.031
68H48X-RAY DIFFRACTIONPOSITIONAL0.031
69I48X-RAY DIFFRACTIONPOSITIONAL0.035
610J48X-RAY DIFFRACTIONPOSITIONAL0.033
611K48X-RAY DIFFRACTIONPOSITIONAL0.031
612L48X-RAY DIFFRACTIONPOSITIONAL0.027
613M48X-RAY DIFFRACTIONPOSITIONAL0.028
614N48X-RAY DIFFRACTIONPOSITIONAL0.036
615O48X-RAY DIFFRACTIONPOSITIONAL0.038
616P48X-RAY DIFFRACTIONPOSITIONAL0.036
617Q48X-RAY DIFFRACTIONPOSITIONAL0.03
618R48X-RAY DIFFRACTIONPOSITIONAL0.029
619S48X-RAY DIFFRACTIONPOSITIONAL0.03
620T48X-RAY DIFFRACTIONPOSITIONAL0.032
71A16X-RAY DIFFRACTIONPOSITIONAL
72B16X-RAY DIFFRACTIONPOSITIONAL0.016
73C16X-RAY DIFFRACTIONPOSITIONAL0.017
74D16X-RAY DIFFRACTIONPOSITIONAL0.024
75E16X-RAY DIFFRACTIONPOSITIONAL0.017
76F16X-RAY DIFFRACTIONPOSITIONAL0.019
77G16X-RAY DIFFRACTIONPOSITIONAL0.019
78H16X-RAY DIFFRACTIONPOSITIONAL0.022
79I16X-RAY DIFFRACTIONPOSITIONAL0.023
710J16X-RAY DIFFRACTIONPOSITIONAL0.02
711K16X-RAY DIFFRACTIONPOSITIONAL0.02
712L16X-RAY DIFFRACTIONPOSITIONAL0.02
713M16X-RAY DIFFRACTIONPOSITIONAL0.033
714N16X-RAY DIFFRACTIONPOSITIONAL0.02
715O16X-RAY DIFFRACTIONPOSITIONAL0.024
716P16X-RAY DIFFRACTIONPOSITIONAL0.025
717Q16X-RAY DIFFRACTIONPOSITIONAL0.027
718R16X-RAY DIFFRACTIONPOSITIONAL0.026
719S16X-RAY DIFFRACTIONPOSITIONAL0.024
720T16X-RAY DIFFRACTIONPOSITIONAL0.027
81A448X-RAY DIFFRACTIONPOSITIONAL
82B448X-RAY DIFFRACTIONPOSITIONAL0.045
83C448X-RAY DIFFRACTIONPOSITIONAL0.043
84D448X-RAY DIFFRACTIONPOSITIONAL0.043
85E440X-RAY DIFFRACTIONPOSITIONAL0.044
86F448X-RAY DIFFRACTIONPOSITIONAL0.041
87G448X-RAY DIFFRACTIONPOSITIONAL0.042
88H448X-RAY DIFFRACTIONPOSITIONAL0.041
89I440X-RAY DIFFRACTIONPOSITIONAL0.047
810J448X-RAY DIFFRACTIONPOSITIONAL0.042
811K448X-RAY DIFFRACTIONPOSITIONAL0.048
812L448X-RAY DIFFRACTIONPOSITIONAL0.043
813M440X-RAY DIFFRACTIONPOSITIONAL0.039
814N448X-RAY DIFFRACTIONPOSITIONAL0.046
815O448X-RAY DIFFRACTIONPOSITIONAL0.044
816P448X-RAY DIFFRACTIONPOSITIONAL0.04
817Q448X-RAY DIFFRACTIONPOSITIONAL0.045
818R448X-RAY DIFFRACTIONPOSITIONAL0.041
819S448X-RAY DIFFRACTIONPOSITIONAL0.045
820T440X-RAY DIFFRACTIONPOSITIONAL0.044
91A24X-RAY DIFFRACTIONPOSITIONAL
92B24X-RAY DIFFRACTIONPOSITIONAL0.059
93C24X-RAY DIFFRACTIONPOSITIONAL0.051
94D24X-RAY DIFFRACTIONPOSITIONAL0.05
95E24X-RAY DIFFRACTIONPOSITIONAL0.044
96F24X-RAY DIFFRACTIONPOSITIONAL0.034
97G24X-RAY DIFFRACTIONPOSITIONAL0.027
98H24X-RAY DIFFRACTIONPOSITIONAL0.056
99J24X-RAY DIFFRACTIONPOSITIONAL0.052
910K24X-RAY DIFFRACTIONPOSITIONAL0.053
911M24X-RAY DIFFRACTIONPOSITIONAL0.057
912N24X-RAY DIFFRACTIONPOSITIONAL0.031
913O24X-RAY DIFFRACTIONPOSITIONAL0.044
914Q24X-RAY DIFFRACTIONPOSITIONAL0.062
915R24X-RAY DIFFRACTIONPOSITIONAL0.064
916S24X-RAY DIFFRACTIONPOSITIONAL0.068
917T24X-RAY DIFFRACTIONPOSITIONAL0.054
101I24X-RAY DIFFRACTIONPOSITIONAL
102P24X-RAY DIFFRACTIONPOSITIONAL0.053
103L24X-RAY DIFFRACTIONPOSITIONAL0.029
111A121X-RAY DIFFRACTIONPOSITIONAL
112B121X-RAY DIFFRACTIONPOSITIONAL0.048
113C121X-RAY DIFFRACTIONPOSITIONAL0.041
114D121X-RAY DIFFRACTIONPOSITIONAL0.041
115E121X-RAY DIFFRACTIONPOSITIONAL0.044
116F121X-RAY DIFFRACTIONPOSITIONAL0.039
117G121X-RAY DIFFRACTIONPOSITIONAL0.039
118H121X-RAY DIFFRACTIONPOSITIONAL0.042
119I121X-RAY DIFFRACTIONPOSITIONAL0.045
1110J121X-RAY DIFFRACTIONPOSITIONAL0.037
1111K121X-RAY DIFFRACTIONPOSITIONAL0.048
1112L121X-RAY DIFFRACTIONPOSITIONAL0.042
1113M121X-RAY DIFFRACTIONPOSITIONAL0.033
1114N121X-RAY DIFFRACTIONPOSITIONAL0.041
1115O121X-RAY DIFFRACTIONPOSITIONAL0.043
1116P121X-RAY DIFFRACTIONPOSITIONAL0.039
1117Q121X-RAY DIFFRACTIONPOSITIONAL0.037
1118R121X-RAY DIFFRACTIONPOSITIONAL0.042
1119S121X-RAY DIFFRACTIONPOSITIONAL0.041
1120T121X-RAY DIFFRACTIONPOSITIONAL0.043
121A63X-RAY DIFFRACTIONPOSITIONAL
122I63X-RAY DIFFRACTIONPOSITIONAL0.041
123R63X-RAY DIFFRACTIONPOSITIONAL0.04
131B63X-RAY DIFFRACTIONPOSITIONAL
132C63X-RAY DIFFRACTIONPOSITIONAL0.038
133D63X-RAY DIFFRACTIONPOSITIONAL0.049
134E63X-RAY DIFFRACTIONPOSITIONAL0.047
135F63X-RAY DIFFRACTIONPOSITIONAL0.063
136G63X-RAY DIFFRACTIONPOSITIONAL0.04
137H63X-RAY DIFFRACTIONPOSITIONAL0.038
138J63X-RAY DIFFRACTIONPOSITIONAL0.043
139K63X-RAY DIFFRACTIONPOSITIONAL0.04
1310L63X-RAY DIFFRACTIONPOSITIONAL0.04
1311M63X-RAY DIFFRACTIONPOSITIONAL0.041
1312N63X-RAY DIFFRACTIONPOSITIONAL0.035
1313O63X-RAY DIFFRACTIONPOSITIONAL0.047
1314P63X-RAY DIFFRACTIONPOSITIONAL0.042
1315Q63X-RAY DIFFRACTIONPOSITIONAL0.039
1316S63X-RAY DIFFRACTIONPOSITIONAL0.051
1317T63X-RAY DIFFRACTIONPOSITIONAL0.055
141A182X-RAY DIFFRACTIONPOSITIONAL
142B182X-RAY DIFFRACTIONPOSITIONAL0.061
143C182X-RAY DIFFRACTIONPOSITIONAL0.045
144D182X-RAY DIFFRACTIONPOSITIONAL0.049
145E182X-RAY DIFFRACTIONPOSITIONAL0.058
146F174X-RAY DIFFRACTIONPOSITIONAL0.044
147G182X-RAY DIFFRACTIONPOSITIONAL0.046
148H182X-RAY DIFFRACTIONPOSITIONAL0.042
149I182X-RAY DIFFRACTIONPOSITIONAL0.051
1410J182X-RAY DIFFRACTIONPOSITIONAL0.04
1411K182X-RAY DIFFRACTIONPOSITIONAL0.05
1412L182X-RAY DIFFRACTIONPOSITIONAL0.048
1413M182X-RAY DIFFRACTIONPOSITIONAL0.041
1414N182X-RAY DIFFRACTIONPOSITIONAL0.051
1415O182X-RAY DIFFRACTIONPOSITIONAL0.04
1416P182X-RAY DIFFRACTIONPOSITIONAL0.04
1417Q182X-RAY DIFFRACTIONPOSITIONAL0.044
1418R182X-RAY DIFFRACTIONPOSITIONAL0.045
1419S182X-RAY DIFFRACTIONPOSITIONAL0.041
1420T182X-RAY DIFFRACTIONPOSITIONAL0.046
151A25X-RAY DIFFRACTIONPOSITIONAL
152C25X-RAY DIFFRACTIONPOSITIONAL0.04
153D25X-RAY DIFFRACTIONPOSITIONAL0.064
154E25X-RAY DIFFRACTIONPOSITIONAL0.047
155F25X-RAY DIFFRACTIONPOSITIONAL0.046
156G25X-RAY DIFFRACTIONPOSITIONAL0.04
157H25X-RAY DIFFRACTIONPOSITIONAL0.043
158I25X-RAY DIFFRACTIONPOSITIONAL0.045
159J25X-RAY DIFFRACTIONPOSITIONAL0.045
1510K25X-RAY DIFFRACTIONPOSITIONAL0.041
1511L25X-RAY DIFFRACTIONPOSITIONAL0.049
1512N25X-RAY DIFFRACTIONPOSITIONAL0.048
1513O25X-RAY DIFFRACTIONPOSITIONAL0.053
1514Q25X-RAY DIFFRACTIONPOSITIONAL0.041
1515R25X-RAY DIFFRACTIONPOSITIONAL0.054
1516S25X-RAY DIFFRACTIONPOSITIONAL0.05
1517T25X-RAY DIFFRACTIONPOSITIONAL0.051
161B25X-RAY DIFFRACTIONPOSITIONAL
162M25X-RAY DIFFRACTIONPOSITIONAL0.048
163P25X-RAY DIFFRACTIONPOSITIONAL0.07
171B12X-RAY DIFFRACTIONPOSITIONAL
172F12X-RAY DIFFRACTIONPOSITIONAL0.032
173G12X-RAY DIFFRACTIONPOSITIONAL0.083
174H12X-RAY DIFFRACTIONPOSITIONAL0.041
175O12X-RAY DIFFRACTIONPOSITIONAL0.038
181D18X-RAY DIFFRACTIONPOSITIONAL
182E18X-RAY DIFFRACTIONPOSITIONAL0.029
183J12X-RAY DIFFRACTIONPOSITIONAL0.035
184K12X-RAY DIFFRACTIONPOSITIONAL0.03
185M12X-RAY DIFFRACTIONPOSITIONAL0.047
186N18X-RAY DIFFRACTIONPOSITIONAL0.033
187P12X-RAY DIFFRACTIONPOSITIONAL0.056
188Q12X-RAY DIFFRACTIONPOSITIONAL0.028
189R12X-RAY DIFFRACTIONPOSITIONAL0.035
1810T18X-RAY DIFFRACTIONPOSITIONAL0.031
191C12X-RAY DIFFRACTIONPOSITIONAL
192I12X-RAY DIFFRACTIONPOSITIONAL0.039
193L12X-RAY DIFFRACTIONPOSITIONAL0.027
194S12X-RAY DIFFRACTIONPOSITIONAL0.029
201A135X-RAY DIFFRACTIONPOSITIONAL
202B135X-RAY DIFFRACTIONPOSITIONAL0.052
203C135X-RAY DIFFRACTIONPOSITIONAL0.046
204D135X-RAY DIFFRACTIONPOSITIONAL0.047
205E135X-RAY DIFFRACTIONPOSITIONAL0.052
206F135X-RAY DIFFRACTIONPOSITIONAL0.048
207G135X-RAY DIFFRACTIONPOSITIONAL0.05
208H135X-RAY DIFFRACTIONPOSITIONAL0.05
209I135X-RAY DIFFRACTIONPOSITIONAL0.051
2010J135X-RAY DIFFRACTIONPOSITIONAL0.046
2011K135X-RAY DIFFRACTIONPOSITIONAL0.053
2012L135X-RAY DIFFRACTIONPOSITIONAL0.047
2013M135X-RAY DIFFRACTIONPOSITIONAL0.046
2014N135X-RAY DIFFRACTIONPOSITIONAL0.044
2015O135X-RAY DIFFRACTIONPOSITIONAL0.049
2016P135X-RAY DIFFRACTIONPOSITIONAL0.045
2017Q135X-RAY DIFFRACTIONPOSITIONAL0.041
2018R135X-RAY DIFFRACTIONPOSITIONAL0.05
2019S135X-RAY DIFFRACTIONPOSITIONAL0.05
2020T135X-RAY DIFFRACTIONPOSITIONAL0.042
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.35-2.37970.29621070.26425713X-RAY DIFFRACTION82
2.3797-2.4110.32961090.25395771X-RAY DIFFRACTION82
2.411-2.44410.27791140.24815830X-RAY DIFFRACTION83
2.4441-2.4790.30051260.24245860X-RAY DIFFRACTION85
2.479-2.5160.31061400.2436032X-RAY DIFFRACTION85
2.516-2.55530.28931370.23426057X-RAY DIFFRACTION87
2.5553-2.59710.30491360.2266350X-RAY DIFFRACTION90
2.5971-2.64190.26841350.22736420X-RAY DIFFRACTION92
2.6419-2.68990.27541520.22186662X-RAY DIFFRACTION95
2.6899-2.74160.2651380.20826748X-RAY DIFFRACTION96
2.7416-2.79760.27511400.20826926X-RAY DIFFRACTION98
2.7976-2.85840.25941360.20486899X-RAY DIFFRACTION99
2.8584-2.92480.25621370.21097030X-RAY DIFFRACTION100
2.9248-2.99790.24571270.20737027X-RAY DIFFRACTION100
2.9979-3.07890.25381380.21387062X-RAY DIFFRACTION100
3.0789-3.16940.23831380.21217052X-RAY DIFFRACTION100
3.1694-3.27170.24041550.20886999X-RAY DIFFRACTION100
3.2717-3.38850.22721310.20147079X-RAY DIFFRACTION100
3.3885-3.5240.2261410.19157081X-RAY DIFFRACTION100
3.524-3.68420.22241630.18347077X-RAY DIFFRACTION100
3.6842-3.87810.2071270.17937082X-RAY DIFFRACTION100
3.8781-4.12070.20891610.1647041X-RAY DIFFRACTION100
4.1207-4.43820.16011480.14967086X-RAY DIFFRACTION100
4.4382-4.88350.18431580.14317135X-RAY DIFFRACTION100
4.8835-5.58720.16861370.16117149X-RAY DIFFRACTION100
5.5872-7.02820.22561660.21967155X-RAY DIFFRACTION100
7.0282-33.04930.20461450.22217305X-RAY DIFFRACTION99
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.1738-0.0640.06920.0695-0.04690.04470.0557-0.0697-0.09310.13910.0196-0.0625-0.08340.0366-00.1387-0.08590.04720.0894-0.0590.267170.0577-0.606282.5191
20.00810.00750.00060.00580.00240.00450.1104-0.0383-0.08260.0480.0724-0.03830.08180.031900.1504-0.05360.01850.1787-0.09340.196373.410816.920897.6299
30.0112-0.00090.01030.0048-0.00950.01580.1988-0.0330.0315-0.05320.1751-0.01820.03380.00450.00040.07750.0070.03350.0876-0.01530.302177.69977.5891118.4787
40.0106-0.0045-0.0072-0.00090.00680.0099-0.03490.0734-0.01620.0396-0.1185-0.0912-0.02920.02630.00010.05480.0010.01550.2278-0.07460.173976.9305-15.6628116.3919
50.0081-0.00580.00120.0038-0.00010.00080.0058-0.00740.06410.02630.0287-0.0226-0.03710.0669-00.14450.0020.04240.2275-0.02730.184372.1766-20.650294.0574
60.0048-0.00930.00070.0069-0.00390.00380.12680.0282-0.0880.0812-0.03370.06160.02260.0228-0.00010.1008-0.0071-0.01810.2253-0.08590.329584.404814.5847109.3456
70.0420.0001-0.0280.00440.00810.02570.1703-0.08670.0293-0.00670.0707-0.04110.05770.05930.00150.1126-0.10470.01920.2052-0.17080.363979.72111.744786.6316
80.00680.00890.00140.0085-0.00440.003-0.079-0.05610.0465-0.0161-0.01490.08410.0157-0.0329-00.1006-0.07220.00480.1592-0.05680.159178.5469-11.173382.4458
90.002-0.0004-0.009400.00460.0084-0.0134-0.03570.0327-0.0175-0.03630.03090.0273-0.035900.1925-0.02660.03940.2138-0.09830.176782.5967-22.2739102.5723
100.01220.0088-0.00690.005-0.00330.0023-0.0035-0.0473-0.05080.04530.09350.00990.1017-0.00400.1675-0.01050.03410.2416-0.0480.188886.2333-6.3811119.1453
110.01160.00580.00890.01390.0150.01060.01020.1517-0.141-0.0906-0.0847-0.0107-0.03220.0072-00.0862-0.0337-0.01570.14840.00290.221355.4486-14.278519.4991
120.0079-0.00040.00090.0084-0.00810.0052-0.03090.00320.0039-0.05390.03930.0068-0.130.059800.0857-0.0403-0.00370.2406-0.14730.422660.5864-9.297741.6538
13-0.0010.0021-0.00190.01250.00410.00240.05380.1107-0.0067-0.0035-0.05190.03330.01040.0227-0.00010.11140.0182-0.02190.1064-0.03550.20763.4437-29.369452.9192
140.0139-0.00680.00560.00430.00110.0039-0.05180.03080.0559-0.0583-0.0276-0.0652-0.074-0.069700.0729-0.0423-0.00230.1295-0.04450.127860.0962-46.730837.6599
150.0030.0075-0.00540.0056-0.003-0.0001-0.1647-0.0301-0.0412-0.018-0.03380.00090.01210.0088-0.00010.1291-0.03330.03570.24740.00880.20655.221-37.385617.0648
160.001-0.0047-0.00620.0036-0.00280.0173-0.0590.01870.0949-0.005-0.01570.07790.0816-0.005200.0906-0.02520.0830.1397-0.09410.188770.2432-41.819144.8179
170.0494-0.07680.00890.20010.03270.0514-0.1145-0.1517-0.07140.24460.0123-0.00150.075-0.05330.00030.0628-0.0215-0.02890.1384-0.03250.170771.2237-19.03849.6461
180.0085-0.00150.0120.00250.00720.00910.0724-0.03940.1121-0.03730.08410.0563-0.02550.01660.00010.1173-0.0211-0.00150.2225-0.01860.270266.5454-7.624829.8581
190.0074-0.00510.00090.00970.00170.00120.1205-0.03780.080.1024-0.0149-0.0574-0.0434-0.076900.0932-0.09840.00270.27980.06630.232262.6894-23.245913.0198
200.0130.00590.01360.098-0.05090.04790.07140.012-0.05730.02810.0320.0546-0.0104-0.00920.01130.0897-0.0690.00330.2252-0.11590.205564.9918-44.376322.2061
210.02150.018-0.00560.0165-0.01020.02040.02670.02970.015-0.10520.1049-0.0426-0.05280.06950.02130.1287-0.08260.07080.1358-0.17420.264765.469116.735689.8135
220.04570.0315-0.04030.13820.06320.1049-0.0822-0.08920.0585-0.0345-0.00760.01510.011-0.0002-0.03510.0192-0.038-0.07210.2811-0.06290.178371.013716.4469116.8121
230.00160.00090.01040.0044-0.00240.0312-0.03760.0047-0.0753-0.03910.0143-0.0797-0.02070.0106-0.00260.04810.0606-0.01390.112-0.05050.177872.3376-9.8863124.7347
240.00960.01660.00430.0519-0.00740.0155-0.07630.01040.00940.0166-0.0175-0.00280.08120.0333-0.00680.13610.00660.06170.1755-0.07470.127767.5743-25.8907102.8234
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1430.0267-0.03330.00120.0613-0.01310.008-0.0483-0.0068-0.00550.0211-0.03180.00440.02530.0245-0.02440.081-0.15520.09020.34090.05740.135624.8913-27.1587121.1818
1440.00530.0008-0.00050.0970.07920.06420.0187-0.02740.0197-0.0111-0.0154-0.00330.03090.0223-0.00280.1513-0.1865-0.00580.2767-0.03680.186918.8567-17.790791.9291
1450.00620.02490.00970.20760.01450.0207-0.06630.00910.0469-0.0127-0.05410.0075-0.04120.0173-0.01820.0609-0.3312-0.07490.3562-0.07660.3225133.152523.916389.1077
1460-0.00360.00520.0411-0.07720.1594-0.0123-0.00540.0033-0.02950.01330.0299-0.00650.0198-0.00720.1491-0.20520.48870.3363-0.17150.1478128.0674.40664.5047
1470.004-0.00020.00670.0117-0.00170.0103-0.07730.01250.0212-0.0144-0.0248-0.02790.00670.0060.00010.3310.14870.00830.5967-0.1230.3103129.6739-25.304274.49
1480.0041-0.00120.00040.0022-0.00320.0041-0.01460.0044-0.0548-0.0337-0.0058-0.03080.06290.003-0.00010.0908-0.01670.09380.4145-0.02510.239138.3135.5065114.1052
1490.0036-0.0008-0.00080.0013-0.00030.0001-0.00850.0199-0.0563-0.0016-0.01430.00150.00060.0063-0.00020.15690.159-0.08170.2558-0.03430.34686.3497-2.417336.9872
1500.0085-0.01330.01780.0259-0.02750.0645-0.02050.00960.03220.0619-0.0053-0.0099-0.00580.0171-0.00050.06310.01610.15820.4797-0.00540.218413.7973-43.694366.7559
1510.0001-0.00450.00060.1201-0.0033-0.0009-0.0259-0.00550.0416-0.0169-0.0266-0.00760.0106-0.0097-0.00930.1282-0.30530.05010.3738-0.09660.34147.0494-53.978437.6057
1520.00650.00840.02880.02020.06070.1875-0.0273-0.0017-0.01120.01440.00940.00840.0348-0.0011-0.00050.0377-0.0396-0.04830.5205-0.06350.49142.489-28.587619.4727
1530.0053-0.0042-0.00040.0130.01130.0213-0.06310.0059-0.00510.0346-0.029-0.03620.01340.017-0.00010.1351-0.1511-0.10570.39710.03350.5053121.0494-5.845835.4229
1540.00020.00010.00030.0006-0.00020.0004-0.0225-0.01360.00040.02460.0137-0.0162-0.03490.00650.00020.1797-0.18020.0550.29840.0660.3577113.8651-5.1164.817
1550.00290.0001-0.00130.00030.0010.0017-0.02950.00390.0123-0.0397-0.0132-0.0252-0.00120.0077-0.00030.3162-0.00920.22580.7202-0.05380.4583111.763-34.8927-4.8587
1560.00110.00940.00240.09270.02630.0079-0.01830.0101-0.0066-0.0239-0.00270.0147-0.01130.0035-00.39610.19370.15740.4825-0.21820.5853117.6798-53.698419.8974
1570.00380.00230.00040.048-0.01270.00880.00190.0217-0.0235-0.01840.03370.00780.01310.0145-0.00010.03340.1208-0.06890.3253-0.05530.2613135.9426-24.6277105.0715
1580.0021-0.0010.00070.0047-0.00460.0185-0.03510.0141-0.0070.0358-0.00120.01310.0407-0.0067-0.00040.10020.0777-0.15180.64290.03310.5331123.243-35.93844.9282
1590.0020.0015-0.00190.0032-0.00040.003-0.0260.01330.00810.0040.04070.015-0.0099-0.0370.00020.25670.06130.01460.2561-0.21110.31113.0651-12.272466.1377
1600.0169-0.03410.03470.18340.13960.31690.09670.02530.0398-0.08990.1095-0.0752-0.13170.13510.08780.1520.01950.0172-0.00740.0910.045544.357420.190794.5029
1610.2495-0.0675-0.01440.09320.02580.0098-0.0097-0.02670.16280.05890.0223-0.0363-0.05770.02180.04420.1899-0.03960.01340.0715-0.08130.079650.352217.2696124.0446
1620.01840.0464-0.01370.1062-0.04490.01550.06230.02280.0528-0.0026-0.02980.0134-0.05530.0085-0.02250.1347-0.0177-0.02010.07160.04430.025551.4235-12.1957130.7783
1630.02970.00270.05980.0513-0.00680.09680.027-0.0142-0.02270.07660.0579-0.02220.06410.02440.01130.140.0151-0.00870.0205-0.01140.118245.8577-27.783105.46
1640.0352-0.07340.00710.13560.010.0893-0.0454-0.0753-0.0602-0.04880.05440.0411-0.02310.02750.11290.22010.01640.02050.0753-0.01310.025741.4532-7.744983.1538
1650.0283-0.0163-0.01260.0123-0.00320.0232-0.01880.03760.0291-0.0790.03360.0308-0.06980.0128-0.01650.1103-0.1005-0.01510.0518-0.0830.1496107.668520.446583.6087
1660.00890.0099-0.02260.1452-0.05240.06640.08310.07260.0402-0.12290.05810.1354-0.03520.05970.15890.1186-0.093-0.02890.1405-0.1827-0.0301104.4846-6.125869.2509
1670.0244-0.03460.02760.0064-0.0170.02240.10650.03-0.0421-0.11030.0453-0.07650.0756-0.002200.1330.0096-0.00570.1371-0.04340.2169108.3796-28.325789.5071
1680.01530.0260.0190.02980.00980.02170.0463-0.0101-0.0850.1426-0.0815-0.03530.07250.0375-00.1918-0.0544-0.02330.27750.01610.1532114.1485-15.593116.3993
1690.06160.0059-0.01690.081-0.09060.22320.0361-0.10720.01920.0296-0.09480.0512-0.17280.1415-0.15410.1843-0.0751-0.00930.2256-0.11040.1343113.672214.5826112.7273
1700.01530.0197-0.06270.0897-0.07330.23130.10570.01880.0744-0.0890.02980.2014-0.2904-0.05430.04290.19780.00640.02880.03860.0160.298831.9592-2.00942.4287
1710.0240.0533-0.01170.0982-0.01240.04360.035-0.07690.02180.2494-0.0396-0.1139-0.0730.0160.07260.1644-0.0013-0.00810.1076-0.07870.084937.2564-22.22964.3835
1720.06610.04640.05430.1043-0.06950.14310.0972-0.0071-0.08830.090.04580.05170.0235-0.01340.06520.1827-0.0121-0.01030.0330.01920.150335.0912-50.080352.8669
1730.3076-0.0315-0.05780.06860.01680.04280.12640.0423-0.23280.071-0.04850.06740.17540.0110.10220.11980.0079-0.06790.1066-0.12640.00928.0923-47.323423.4141
1740.0136-0.0375-0.02210.05850.04180.0126-0.0289-0.0083-0.025-0.01210.08770.07690.0598-0.05750.00410.12660.0116-0.04380.14030.05110.088726.239-17.741217.0488
1750.2768-0.0312-0.02070.0921-0.01180.18170.0457-0.11690.0083-0.0555-0.01770.102-0.01990.3006-0.10210.0891-0.0646-0.02220.3157-0.03580.0245100.203-24.607850.6126
1760.00970.0217-0.0240.026-0.03180.0437-0.0586-0.03040.00970.0028-0.00670.0019-0.16770.0604-0.00740.1654-0.0851-0.01570.1446-0.03420.233995.5377-2.085230.8672
1770.01360.0062-0.01540.24880.04360.01230.00540.003-0.0045-0.0235-0.07860.0366-0.01210.2292-0.01140.1376-0.0645-0.00860.19360.03190.040789.2458-13.94793.7876
1780.0273-0.06980.04840.1921-0.09670.09850.10950.1372-0.0782-0.1292-0.04530.1938-0.11180.14250.04220.1654-0.0320.05530.3094-0.16730.136890.1149-44.14566.6332
1790.01740.00130.02640.0392-0.01470.02410.04920.0427-0.0616-0.0788-0.0750.01890.08620.1161-0.00010.1210.05570.03070.1218-0.0130.277696.7559-50.606935.5674
1800.0006-0.0112-0.01810.0550.0670.09570.10130.04210.0273-0.06610.1127-0.02960.0299-0.00590.00470.1271-0.0122-0.01770.03010.0130.072953.668822.9387.2906
1810.00450.0014-0.0050.0064-0.0020.00320.0347-0.08730.0030.1286-0.00250.0163-0.0888-0.0613-0.00010.2130.01470.00830.29770.06230.0669104.4204-20.5589121.6289
182-0.00180.0036-0.00030.0037-0.0013-0.0026-0.03590.00360.10240.01470.049-0.07490.0735-0.1524-0.00030.0479-0.0371-0.0230.20680.11080.132678.2507-8.86013.3924
1830.2091-0.01510.26350.13840.17470.57510.09810.020.12510.02410.1693-0.04150.11810.13370.15360.0405-0.05760.0175-0.0602-0.18980.063660.983822.9047123.1717
1840.03390.0345-0.01210.0388-0.01230.02460.0349-0.13820.00440.0639-0.09930.02140.1303-0.0238-0.01410.13480.0314-0.02120.0956-0.0137-0.004662.964-11.706134.3766
1850.0099-0.02060.0170.0372-0.02380.04030.01710.0621-0.0249-0.07720.0726-0.00070.04540.05780.08410.10740.170.082-0.3756-0.00370.044156.5712-33.3107105.6181
1860.1320.00980.06910.05150.0110.0458-0.03470.05640.0553-0.1220.0143-0.0668-0.05070.0223-0.01210.1546-0.03380.08410.0317-0.06060.077450.7503-11.885676.7089
1870.0115-0.00130.00740.0149-0.00290.0054-0.07870.10620.02330.0522-0.07720.0119-0.0572-0.0833-0.00010.1376-0.0836-0.01020.20250.04420.209997.519126.377686.1663
1880.17760.0171-0.01550.0963-0.06410.05-0.04590.08750.0936-0.0156-0.0423-0.06730.0574-0.0396-0.03380.079-0.0405-0.04820.1223-0.08190.064593.0795-3.706865.972
1890.01270.0047-0.00380.00020.00080.0180.1242-0.0361-0.02110.03690.0650.05330.0676-0.0349-00.1862-0.08190.0670.14-0.08030.119997.2479-32.688587.8926
1900.01440.016-0.0150.0133-0.01710.0304-0.1345-0.05560.1178-0.04790.00690.15050.04550.1573-0.00130.215-0.03820.00380.1779-0.1230.1347104.577916.0629120.5975
1910.0391-0.0094-0.0940.0314-0.01350.23380.0862-0.01610.0604-0.00390.1315-0.0008-0.03680.04130.01320.09020.00890.00410.0158-0.01160.156341.60113.490137.7972
1920.0110.0122-0.01230.0327-0.02830.03440.045-0.0336-0.00920.0622-0.036-0.03470.02550.036-0.00120.0924-0.0143-0.04020.1696-0.17390.244948.4338-18.132866.4022
1930.0379-0.012-0.02040.00590.00150.01310.0467-0.1088-0.0807-0.0194-0.0152-0.00510.0635-0.04030.01050.1405-0.00070.01080.0501-0.02910.144746.6155-52.842555.4872
1940.0171-0.00160.00390.0149-0.01390.01290.00580.02070.03-0.11370.05050.0268-0.0666-0.00250.00430.1087-0.04380.01260.11120.00460.009238.1485-52.950619.8419
1950.0972-0.08490.05090.0954-0.03470.0249-0.02680.07920.06730.0269-0.1098-0.2039-0.0891-0.0313-0.00510.2081-0.01940.00580.1322-0.0090.04635.1241-18.23638.9032
1960.18510.07350.12230.02790.05030.5337-0.0902-0.08580.05720.0028-0.0866-0.0013-0.01710.0458-0.2590.0804-0.1103-0.0110.1586-0.0161-0.085291.2432-26.866258.3302
1970.0139-0.00240.00850.00810.00660.0133-0.01830.01920.0385-0.06790.06890.053-0.0378-0.02540.00010.0760.0105-0.01520.2966-0.15150.263386.22892.358337.1386
1980.2604-0.0952-0.10490.04590.05150.0639-0.0645-0.0442-0.08110.1916-0.00030.12010.14790.0076-0.01650.137-0.06990.03340.1522-0.11770.141378.5867-45.49443.3542
1990.0074-0.01170.0010.0134-0.00020.0076-0.03050.0018-0.02210.05960.10340.0740.0331-0.04750.00010.0947-0.01570.00070.0799-0.00450.370286.4821-56.607837.4289
2000.0316-0.03930.01160.0326-0.01040.006-0.06840.0825-0.0246-0.10440.1023-0.03640.0414-0.03550.01620.1422-0.0105-0.03480.04250.01170.094934.31911.790186.4087
2010.03290.01280.05630.082-0.00260.02640.06460.10370.1454-0.10880.1249-0.1313-0.0333-0.07240.18160.18960.0083-0.0129-0.2215-0.3158-0.062740.401324.2525114.8192
2020.04730.017-0.11890.0158-0.04720.12670.00210.14370.06040.04240.08640.0987-0.1851-0.02690.160.20360.00180.01770.05150.0202-0.368144.38410.6051135.3779
2030.0383-0.0613-0.02580.09010.0140.0483-0.04420.0473-0.263-0.0628-0.0364-0.0667-0.0574-0.0573-0.05120.1323-0.02810.0195-0.3530.15220.020140.7835-26.5684119.8291
2040.0046-0.00370.01190.1367-0.03270.0629-0.064-0.0303-0.17870.1470.11020.0594-0.0585-0.00570.06650.0873-0.1015-0.0240.0717-0.10210.040234.5091-19.816989.7208
205-0.0066-0.00160.0141-0.00430.0069-0.0216-0.0121-0.24450.22340.14690.04140.0261-0.04660.12960.1010.0047-0.2379-0.0814-0.0902-0.20140.0902118.419523.460394.4753
2060.4239-0.00710.19290.05960.02280.1409-0.1007-0.00660.1963-0.052-0.0364-0.0809-0.1467-0.1132-0.02310.1384-0.08250.02160.1523-0.02720.0643112.66836.876568.2757
2070.0746-0.04010.06780.07920.03110.08250.05980.1158-0.05430.0521-0.10220.08160.03320.152-0.00180.1689-0.05190.01410.1523-0.10640.2166113.797-23.814775.8578
2080.0605-0.0271-0.0197-0.0072-0.01510.1066-0.1127-0.0083-0.2133-0.12830.0361-0.07790.1253-0.0109-0.00660.12340.0086-0.04610.2207-0.01570.1436120.2074-25.9252106.7776
2090.0096-0.0128-0.01180.01590.01320.05860.087-0.1568-0.0208-0.0136-0.0298-0.02170.13780.02650.01050.1917-0.095-0.10640.2161-0.19550.1087122.94133.5735118.1935
2100.05270.003-0.02850.03860.01270.09920.06460.05150.1162-0.2069-0.06380.032-0.0931-0.04730.00080.1080.0562-0.02140.05010.03340.225821.2662-3.150431.4681
2110.030.0257-0.04430.0051-0.02470.01940.0869-0.26390.2854-0.05190.0366-0.0462-0.11550.150.01980.1487-0.01230.0330.1474-0.12380.188128.1718-10.164161.4974
2120.05330.09250.03490.19840.12120.1558-0.0456-0.0973-0.05750.1235-0.11340.08420.0146-0.0724-0.08310.18690.00450.01460.1295-0.00660.04129.4066-41.658964.3707
2130.0319-0.04910.02980.11180.00780.0438-0.0943-0.12570.05340.06380.01180.0667-0.07820.0021-0.05750.1146-0.0837-0.00320.0613-0.09870.138922.9629-54.350636.0901
2140.0135-0.0268-0.03460.03340.0560.05450.04780.1247-0.0413-0.0662-0.07640.1330.0277-0.079800.1507-0.0074-0.05840.184-0.00310.135517.8441-30.555115.7753
2150.04220.00660.00120.0155-0.02260.0103-0.1004-0.0236-0.03170.0715-0.04140.0190.06580.1405-0.00010.10140.10050.00760.26230.02920.1383107.7509-37.695847.8825
2160.06190.0515-0.04460.0242-0.01550.0673-0.0064-0.16930.09640.2138-0.1130.0597-0.00410.1119-0.01720.1612-0.0993-0.00530.2921-0.09890.2161106.1723-6.960440.8123
217-0.0022-0.01410.00330.0375-0.0185-0.001-0.0285-0.10340.1379-0.01180.0294-0.0454-0.22940.0236-0.00010.2543-0.0906-0.01170.26440.04170.15498.9251-3.919310.1325
2180.0638-0.00050.04670.0141-0.01390.0416-0.09810.1740.01390.0126-0.00740.0301-0.12830.1051-0.04120.2317-0.12640.02120.4442-0.10980.033296.2346-32.9744-2.0398
2190.0133-0.00440.0017-0.00080.0090.0137-0.07820.0325-0.07970.05190.0888-0.1454-0.02340.1214-00.15040.07340.03020.243-0.17490.3416101.7338-53.77721.2849
2200.00430.00490.02070.00530.02060.1054-0.0008-0.0039-0.0077-0.06590.01210.0070.00180.02920.00040.3016-0.00080.0020.1806-0.08250.111849.65130.136101.0259
2210.0018-0.0042-0.00130.06280.02250.00960.02580.02730.0163-0.0091-0.01920.0634-0.02780.02690.00360.2351-0.03820.0330.0645-0.01680.051954.6627-24.7063130.0632
2220.0084-0.00260.00680.0065-0.00180.01140.05240.05150.04350.0136-0.0278-0.0155-0.0292-0.0280.00020.4065-0.13360.0280.0977-0.07490.198946.5728-31.557992.9451
223-00.0002-0.00020.00020.00070.00120.05950.01010.0393-0.00080.03030.00540.0032-0.0221-0.00020.39250.07730.07490.29640.02570.19243.46292.368675.0582
2240.0041-0.00190.00240.00850.0110.02190.0357-0.0103-0.00510.0070.00270.0074-0.01020.0291-0.00010.2970.045-0.01920.408-0.11160.1023101.742220.002172.0331
2250.10440.0484-0.07380.0901-0.04960.05720.0457-0.03710.0220.00060.036-0.0275-0.01420.01190.01010.243-0.0323-0.07870.2127-0.17460.1665100.3116-18.170267.0169
2260.00410.00230.010.0054-0.00450.05040.03530.02690.0092-0.0156-0.01410.0157-0.014-0.01350.00020.3023-0.0889-0.06710.30810.03550.3819106.9912-35.229100.5132
2270.00620.0042-0.00070.0204-0.00380.00910.012-0.01420.0293-0.00530.0137-0.02630.0317-0.0105-0.00010.5153-0.14110.04380.3498-0.08730.1615112.8998-7.8697126.9539
2280.0058-0.00190.0090.024-0.03920.07240.07490.03470.0204-0.00520.0061-0.0237-0.006-0.00150.00010.5809-0.12810.17490.2965-0.21690.3834109.507326.562109.3396
2290.0011-0.00090.00670.0041-0.01330.05-0.0056-0.0176-0.0151-0.025-0.00020.00710.0158-0.0189-0.00360.447-0.0256-0.08050.0326-0.22730.405937.96231.604353.4604
2300.00110.0007-0.00160.0489-0.00630.00220.01070.0188-0.0660.0212-0.005-0.0124-0.03330.0017-0.00040.4050.0345-0.16360.26390.00170.15742.4126-32.492670.7053
2310.01170.0046-0.00720.044-0.03880.03490.01290.0330.00350.01850.021-0.0130.0392-0.02310.0030.30110.1182-0.10160.3363-0.01860.059328.7298-43.352411.0006
2320.0093-0.0029-0.00170.02960.01040.01080.091-0.01560.02810.03790.04890.0288-0.01770.0115-0.00010.510.10620.02310.15050.06740.222729.3271-5.098416.3143
2330.00350.00060.01880.00060.00330.10860.01820.0475-0.01220.0061-0.01750.00330.0148-0.030900.4028-0.0477-0.02170.30080.12020.257989.70454.912921.5526
2340.0056-0.00090.0040.02940.00830.0052-0.04570.0337-0.04030.0184-0.0221-0.01070.0005-0.0116-0.00020.2431-0.0231-0.05270.35610.08390.197283.6837-21.2093-5.4977
2350.0027-0.00690.00840.0172-0.02160.02710.0516-0.026-0.02490.0027-0.0238-0.0066-0.02870.009-00.43680.02960.05560.1285-0.1150.387187.8182-56.112411.303
2360.00620.00090.010.00430.01380.05250.0379-0.00030.00240.04290.01350.0012-0.01150.02920.00020.4501-0.1367-0.09670.40440.09920.385396.3639-50.551948.6552
2370.01530.0201-0.02210.0915-0.02590.02880.0182-0.01070.002-0.03230.01550.01410.00010.0180.00880.1642-0.0766-0.0922-0.0327-0.28910.028256.108213.1438135.1524
2380.0042-0.00240.00780.01410.01040.03550.02660.00120.00080.0122-0.0087-0.0005-0.03230.018-00.2639-0.00870.01830.0944-0.17450.457237.1874-60.079644.7486
2390.0954-0.0560.01980.057-0.00820.00460.05230.0338-0.03880.01570.0333-0.04750.0150.00160.00990.3198-0.2016-0.02740.216-0.30670.075997.5321-12.48854.5637
2400.23660.21180.01080.242-0.01820.0168-0.01780.0069-0.00590.009-0.00920.01170.006-0.0043-0.0060.27890.03380.03330.1479-0.0827-0.064959.87139.4844134.4659
2410.0007-0.000900.0016-0.0004-0.00010.0107-0.0241-0.00290.0154-0.0123-0.0102-0.01630.0080.00020.4831-0.06290.03970.37730.14770.277998.257916.203871.2836
2420.2523-0.05670.1250.05610.03250.1855-0.0024-0.0065-0.0129-0.001-0.00770.01310.0082-0.0029-0.00160.1532-0.14160.09360.1896-0.37910.001397.404-20.639170.6538
2430.0001-0-0.00020.00010.00020.00010.02450.0082-0.00860.0050.0220.00560.004-0.0081-00.6067-0.0686-0.04320.3513-0.0120.2418104.5683-32.9036104.3801
2440.06680.0057-0.09270.1015-0.0220.32620.004-0.012-0.0069-0.0040.00670.0033-0.00280.00670.00530.25330.0673-0.2340.13720.26050.338133.3219-3.626119.2311
2450.3981-0.31990.0480.3324-0.05670.08710.01160.0119-0.0007-0.0076-0.00840.0073-0.01170.00930.00090.4063-0.1045-0.03150.1947-0.15690.150249.9855-28.913290.0206
2460.0864-0.0489-0.08450.0680.06990.10160.0012-0.02290.01590.0020.00010.0024-0.0186-0.00350.00010.25630.0995-0.06780.17670.00260.294147.5165.36276.2135
2470.21150.0207-0.2980.0570.04590.52140.0046-0.0021-0.00910.00740.00160.00430.00520.010.00050.5343-0.1964-0.02210.3856-0.24530.5091105.520526.7265105.9325
2480.07110.03030.00120.173-0.00120.05890.00230.0036-0.01940.0025-0.0005-0.00920.01420.00700.4422-0.01640.00840.3122-0.17250.305341.7689-1.447655.1366
2490.4614-0.20220.1810.177-0.09610.1259-0.00180.01270.01120.00790.0201-0.0167-0.00110.0030.00310.3743-0.15820.04720.1054-0.08150.220439.5364-59.02940.2283
2500.2236-0.2618-0.08660.33010.09810.0526-0.0235-0.0021-0.00370.0064-0.0268-0.0079-0.001-0.00680.00060.26370.009-0.08960.3207-0.00660.1432.4972-39.82539.9491
2510.05120.0286-0.12410.0399-0.02830.3870.0079-0.0079-0.00140.0059-0.00220.00880.00580.00230.00320.2894-0.0425-0.02260.1977-0.23220.266393.4391-9.950852.4382
2520.2638-0.3319-0.22240.59930.23660.3364-0.0085-0.0035-0.0109-0.00480.00530.00480.0039-0.0023-00.54020.0910.10880.40140.20320.278685.6912.792619.1333
2530.6615-0.37080.22450.3317-0.10080.1952-0.0066-0.003-0.00340.0057-0.0194-0.0084-0.0107-0.00520.00120.495-0.0523-0.08080.5069-0.07650.257580.8459-25.1598-3.7401
2540.22280.2256-0.01120.2434-0.02940.02060.00160.0032-0.0112-0.0018-0.0137-0.00410.00230.00340.00060.32050.10880.02240.35190.15120.577392.9284-47.206350.6826
2550.25540.0230.16910.0465-0.0250.165-0.0015-0.00230.00340.01250.00290.0042-0.00320.00070.00010.17330.04370.0860.12660.13380.319657.2591-26.1439125.7776
2560.26850.2876-0.19930.404-0.23240.2247-0.00970.01010.01940.0076-0.0080.0042-0.0045-0.00240.00050.5423-0.0307-0.00250.4106-0.170.1853108.9461-4.4869126.6724
2570.53990.19870.21190.22590.13250.10250.0364-0.0069-0.0067-0.0110.0130.00050.00120.01170.00030.26410.09330.03880.25830.19570.222845.7255-35.31967.9536
2580.730.11560.43010.03620.03490.31620.0067-0.0115-0.0014-0.0005-0.0204-0.01170.00030.0040.00130.21350.07770.1050.1-0.24440.416184.8908-56.232615.6049
2590.179-0.1403-0.08170.3079-0.0240.37050.055-0.02760.05050.06210.14290.0755-0.1937-0.15730.24040.11430.033-0.0255-0.02470.00230.047139.168419.46591.6029
2600.009-0.0584-0.00650.03680.0520.00310.20520.0219-0.0150.04520.02570.0809-0.0972-0.00290.24340.1541-0.0743-0.0406-0.0119-0.1829-0.05345.630220.7761123.0949
2610.0242-0.0038-0.03640.0229-0.03560.08190.0108-0.02190.02770.131-0.025-0.0690.0849-0.09460.00430.14050.0220.01230.0547-0.00670.076647.6274-9.2164134.3348
2620.07420.0468-0.02610.02030.02260.02990.0854-0.0612-0.12730.0638-0.0193-0.03150.0064-0.07380.0110.0843-0.03470.03410.0579-0.00530.049742.1949-29.3208109.8969
2630.0606-0.10060.03640.1558-0.06470.0433-0.0421-0.03510.0791-0.0107-0.0391-0.12790.07-0.0516-0.04450.0713-0.05580.03830.0769-0.0251-0.001836.9148-11.622583.6413
2640.01620.0288-0.04080.0945-0.08630.1160.07160.03140.0496-0.04870.1198-0.0403-0.1230.03160.08120.1492-0.0592-0.03480.0766-0.05960.1747112.578823.234185.4392
2650.03120.00990.01760.0426-0.13540.24480.0620.0335-0.07620.0402-0.0947-0.01430.00710.4165-0.09980.1269-0.1176-0.0190.1293-0.10110.0769108.5966-2.632166.6979
2660.0140.00130.01340.05290.04090.03670.16460.0809-0.00880.11060.0462-0.07910.05660.13860.00310.1147-0.04030.04770.1446-0.05190.1537111.9648-28.97484.7526
2670.07730.02320.00250.06550.08880.06410.1488-0.1061-0.11130.2414-0.0874-0.15320.12180.10020.00160.14310.0299-0.02590.2701-0.0560.1707118.4072-19.4932114.8345
2680.06670.04390.02220.03710.03570.04970.0674-0.0613-0.0997-0.01190.0142-0.1092-0.09310.17630.07550.1247-0.0868-0.00870.192-0.13530.1301118.82612.6928115.2744
2690.06370.0271-0.02190.0663-0.06840.34270.01780.0714-0.08720.18650.12750.3182-0.0877-0.19760.04450.11450.0644-0.0144-0.01540.00240.29626.8-0.385239.9654
2700.03530.0392-0.00910.0584-0.0257-0.00350.1748-0.1620.03050.1451-0.11370.1865-0.0109-0.11360.00310.18170.0294-0.04290.1571-0.06160.100132.9047-18.333865.8944
2710.0393-0.0060.00190.12580.00270.1786-0.07470.02130.00820.03720.22980.16460.082-0.2190.0590.1208-0.01070.03450.0544-0.04560.031831.6175-49.31757.6625
2720.0349-0.0233-0.05870.02890.02920.05920.0112-0.0318-0.06310.0129-0.06080.27270.1018-0.0692-0.00860.0733-0.059-0.01280.0944-0.05220.069424.2128-50.881526.3365
2730.0467-0.029-0.04220.09420.08820.08540.110.05650.0346-0.0825-0.08080.0012-0.1265-0.02090.01250.2038-0.005-0.07050.18150.01470.185921.2491-20.724615.4486
2740.0911-0.0331-0.10650.22280.03110.19810.0595-0.01350.00980.1417-0.1671-0.07580.03040.1966-0.07290.0787-0.001-0.03220.2002-0.04680.1246104.912-28.203151.2612
2750.05290.0374-0.09740.0532-0.01620.1893-0.0109-0.03920.076-0.00230.06440.1064-0.14030.26450.01930.0908-0.0884-0.04820.161-0.02960.2443100.8148-1.571133.6209
2760.15170.05920.05670.06350.05080.0879-0.09560.0310.0103-0.0739-0.0757-0.0375-0.12390.1444-0.00470.141-0.0883-0.01350.24910.05360.113393.7667-10.03993.4809
2770.09130.0215-0.01660.0597-0.02570.0299-0.00540.0692-0.201-0.09550.02010.18560.00480.2053-0.00240.1832-0.09640.08120.2602-0.18360.269193.6863-42.19992.1975
2780.04790.09050.08660.10350.13610.16820.09180.0591-0.226-0.06290.1728-0.1326-0.00470.14550.05270.11690.10460.06710.1338-0.05340.3098100.5304-53.339331.6668
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain A and resid 1:12
2X-RAY DIFFRACTION2chain B and resid 1:12
3X-RAY DIFFRACTION3chain C and resid 1:12
4X-RAY DIFFRACTION4chain D and resid 1:12
5X-RAY DIFFRACTION5chain E and resid 1:12
6X-RAY DIFFRACTION6chain F and resid 1:12
7X-RAY DIFFRACTION7chain G and resid 1:12
8X-RAY DIFFRACTION8chain H and resid 1:12
9X-RAY DIFFRACTION9chain I and resid 1:12
10X-RAY DIFFRACTION10chain J and resid 1:12
11X-RAY DIFFRACTION11chain K and resid 1:12
12X-RAY DIFFRACTION12chain L and resid 1:12
13X-RAY DIFFRACTION13chain M and resid 1:12
14X-RAY DIFFRACTION14chain N and resid 1:12
15X-RAY DIFFRACTION15chain O and resid 1:12
16X-RAY DIFFRACTION16chain P and resid 1:12
17X-RAY DIFFRACTION17chain Q and resid 1:12
18X-RAY DIFFRACTION18chain R and resid 1:12
19X-RAY DIFFRACTION19chain S and resid 1:12
20X-RAY DIFFRACTION20chain T and resid 1:12
21X-RAY DIFFRACTION21chain A and resid 16:22
22X-RAY DIFFRACTION22chain B and resid 16:22
23X-RAY DIFFRACTION23chain C and resid 16:22
24X-RAY DIFFRACTION24chain D and resid 16:22
25X-RAY DIFFRACTION25chain E and resid 16:22
26X-RAY DIFFRACTION26chain F and resid 16:22
27X-RAY DIFFRACTION27chain G and resid 16:22
28X-RAY DIFFRACTION28chain H and resid 16:22
29X-RAY DIFFRACTION29chain I and resid 16:22
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202X-RAY DIFFRACTION202chain C and resid 163:183
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205X-RAY DIFFRACTION205chain F and resid 163:183
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222X-RAY DIFFRACTION222chain D and resid 184:186
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236X-RAY DIFFRACTION236chain T and resid 184:186
237X-RAY DIFFRACTION237chain B and resid 184:186
238X-RAY DIFFRACTION238chain M and resid 184:186
239X-RAY DIFFRACTION239chain P and resid 184:186
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248X-RAY DIFFRACTION248chain K and resid 187:188
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255X-RAY DIFFRACTION255chain C and resid 187:188
256X-RAY DIFFRACTION256chain I and resid 187:188
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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る