- PDB-3rgc: The virulence factor PEB4 and the periplasmic protein Cj1289 are ... -
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Basic information
Entry
Database: PDB / ID: 3rgc
Title
The virulence factor PEB4 and the periplasmic protein Cj1289 are two structurally related SurA-like chaperones in the human pathogen Campylobacter jejuni
Redundancy: 17.5 % / Av σ(I) over netI: 6.1 / Number: 263217 / Rsym value: 0.103 / D res high: 2.799 Å / D res low: 75.268 Å / Num. obs: 15074 / % possible obs: 100
Diffraction reflection shell
Highest resolution (Å)
Lowest resolution (Å)
% possible obs (%)
ID
Rmerge(I) obs
Rsym value
Redundancy
8.86
75.27
99.9
1
0.044
0.044
15.4
6.26
8.86
100
1
0.059
0.059
15.5
5.11
6.26
100
1
0.109
0.109
16.7
4.43
5.11
100
1
0.066
0.066
17.2
3.96
4.43
100
1
0.066
0.066
17.6
3.62
3.96
100
1
0.091
0.091
17.7
3.35
3.62
100
1
0.132
0.132
17.9
3.13
3.35
100
1
0.219
0.219
18
2.95
3.13
100
1
0.325
0.325
18
2.8
2.95
100
1
0.492
0.492
17.9
Reflection
Resolution: 2.3→62.3 Å / Num. all: 26871 / Num. obs: 26871 / % possible obs: 100 % / Redundancy: 7 % / Rsym value: 0.086 / Net I/σ(I): 14.3
Reflection shell
Resolution (Å)
Redundancy (%)
Rmerge(I) all
Rmerge(I) obs
Mean I/σ(I) obs
Num. measured all
Num. unique all
Rpim(I) all
Rrim(I) all
Rsym value
Net I/σ(I) obs
% possible all
2.3-2.42
7.2
0.732
0.633
1.1
27851
3867
0.272
0.732
0.633
3.2
100
2.42-2.57
7.2
0.518
0.45
1.6
26354
3650
0.192
0.518
0.45
4.5
100
2.57-2.75
7.2
0.327
0.283
2.5
24865
3446
0.121
0.327
0.283
6.7
100
2.75-2.97
7.2
0.202
0.175
4.2
23040
3211
0.075
0.202
0.175
9.7
100
2.97-3.25
7.1
0.126
0.109
6.5
21136
2962
0.047
0.126
0.109
14.2
100
3.25-3.64
7.1
0.073
0.064
10.2
19072
2697
0.027
0.073
0.064
20.1
100
3.64-4.2
6.9
0.058
0.051
11.8
16711
2407
0.022
0.058
0.051
25.7
100
4.2-5.14
6.8
0.075
0.067
8.1
13934
2054
0.029
0.075
0.067
29.1
100
5.14-7.27
6.3
0.08
0.07
8
10269
1626
0.031
0.08
0.07
29.4
100
7.27-62.3
6.3
0.041
0.035
16.1
6000
951
0.016
0.041
0.035
36.9
98.8
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Processing
Software
Name
Version
Classification
NB
MOSFLM
datareduction
SCALA
3.3.9
datascaling
PHENIX
1.6.4_486
refinement
PDB_EXTRACT
3.1
dataextraction
ADSC
Quantum
datacollection
Refinement
Method to determine structure: MAD / Resolution: 2.3→52.032 Å / Occupancy max: 1 / Occupancy min: 1 / FOM work R set: 0.7931 / SU ML: 0.34 / σ(F): 0 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Rfree
0.2778
1322
5.04 %
Rwork
0.2235
-
-
obs
0.2264
26219
97.72 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 56.34 Å2 / ksol: 0.363 e/Å3
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