登録情報 | データベース: PDB / ID: 3qmb |
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タイトル | Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1 |
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要素 | - 5'-D(*GP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*C)-3'
- CpG-binding protein
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キーワード | DNA BINDING PROTEIN/DNA / Structural Genomics Consortium / SGC / CXXC-type Zn finger / DNA binding (デオキシリボ核酸) / unmethylated CpG motifs / nucleus speckle / DNA BINDING PROTEIN-DNA complex |
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機能・相同性 | 機能・相同性情報
unmethylated CpG binding / XBP1(S) activates chaperone genes / Set1C/COMPASS complex / histone methyltransferase complex / Formation of WDR5-containing histone-modifying complexes / cis-regulatory region sequence-specific DNA binding / methylated histone binding / nuclear matrix / nuclear speck / regulation of DNA-templated transcription ...unmethylated CpG binding / XBP1(S) activates chaperone genes / Set1C/COMPASS complex / histone methyltransferase complex / Formation of WDR5-containing histone-modifying complexes / cis-regulatory region sequence-specific DNA binding / methylated histone binding / nuclear matrix / nuclear speck / regulation of DNA-templated transcription / positive regulation of DNA-templated transcription / zinc ion binding / 核質 / 細胞核 / 細胞質基質類似検索 - 分子機能 CpG binding protein, C-terminal / CpG binding protein C-terminal domain / Spp1/CFP1 / CXXC zinc finger domain / Zinc finger, CXXC-type / Zinc finger CXXC-type profile. / Zinc finger, PHD-type, conserved site / PHD-finger / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. ...CpG binding protein, C-terminal / CpG binding protein C-terminal domain / Spp1/CFP1 / CXXC zinc finger domain / Zinc finger, CXXC-type / Zinc finger CXXC-type profile. / Zinc finger, PHD-type, conserved site / PHD-finger / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Zinc finger, PHD-finger / Zinc finger, PHD-type / PHD zinc finger / Zinc finger, FYVE/PHD-type / Zinc finger, RING/FYVE/PHD-type類似検索 - ドメイン・相同性 デオキシリボ核酸 / DNA (> 10) / CXXC-type zinc finger protein 1類似検索 - 構成要素 |
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生物種 | ![](img/tx_human.gif) Homo sapiens (ヒト) |
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手法 | X線回折 / シンクロトロン / 単波長異常分散 / 解像度: 2.06 Å |
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データ登録者 | Lam, R. / Xu, C. / Bian, C.B. / Kania, J. / Bountra, C. / Weigelt, J. / Arrowsmith, C.H. / Edwards, A.M. / Bochkarev, A. / Min, J. / Structural Genomics Consortium (SGC) |
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引用 | ジャーナル: Nat Commun / 年: 2011 タイトル: The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain. 著者: Xu, C. / Bian, C. / Lam, R. / Dong, A. / Min, J. |
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履歴 | 登録 | 2011年2月4日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2011年2月23日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年7月13日 | Group: Version format compliance |
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改定 1.2 | 2017年11月8日 | Group: Refinement description / カテゴリ: software |
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改定 1.3 | 2024年2月21日 | Group: Data collection / Database references / Derived calculations カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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