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- PDB-3pji: Crystal structure of AgamOBP22a at 1.7 angstrom in the open statu... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3pji | ||||||
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Title | Crystal structure of AgamOBP22a at 1.7 angstrom in the open status for ligand binding. | ||||||
![]() | Odorant binding protein (AGAP010409-PA) | ||||||
![]() | TRANSPORT PROTEIN / PBP-GOBP alpha helices. | ||||||
Function / homology | ![]() odorant binding / response to stimulus / sensory perception of smell / extracellular space Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Zhang, S. / Ren, H. | ||||||
![]() | ![]() Title: Crystal Structures of Anopheles gambiae Odorant-binding Protein AgamOBP22a and Complexes with Bound Odorants Authors: Ren, H. / Yang, G. / Winberg, G. / Turin, L. / Zhang, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 36.5 KB | Display | ![]() |
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PDB format | ![]() | 27.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 437.1 KB | Display | ![]() |
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Full document | ![]() | 438.4 KB | Display | |
Data in XML | ![]() | 8.2 KB | Display | |
Data in CIF | ![]() | 10.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 16043.329 Da / Num. of mol.: 1 / Fragment: AgamOBP22a, UNP residues 22-144 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: PEST / Gene: OBP22, OBPjj83b, AGAP010409 / Plasmid: pET28a / Production host: ![]() ![]() | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.83 Å3/Da / Density % sol: 32.69 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7 Details: 1.8 M Ammonium citrate tribasic, 3.5% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU SATURN 944 / Detector: CCD / Date: Aug 6, 2009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→30 Å / Num. obs: 11797 / Redundancy: 4.4 % / Rsym value: 0.062 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.49 Å / VDW probe radii: 0.8 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 50.345 Å2 / ksol: 0.395 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 1.704→25.424 Å
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Refine LS restraints |
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LS refinement shell |
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