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- PDB-1flp: STRUCTURE OF THE SULFIDE-REACTIVE HEMOGLOBIN FROM THE CLAM LUCINA... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1flp | ||||||
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Title | STRUCTURE OF THE SULFIDE-REACTIVE HEMOGLOBIN FROM THE CLAM LUCINA PECTINATA: CRYSTALLOGRAPHIC ANALYSIS AT 1.5 ANGSTROMS RESOLUTION | ||||||
![]() | HEMOGLOBIN I (AQUO MET) | ||||||
![]() | OXYGEN TRANSPORT | ||||||
Function / homology | ![]() hemoglobin complex / oxygen transport / oxygen binding / heme binding / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Rizzi, M. / Wittenberg, J.B. / Ascenzi, P. / Fasano, M. / Coda, A. / Bolognesi, M. | ||||||
![]() | ![]() Title: Structure of the sulfide-reactive hemoglobin from the clam Lucina pectinata. Crystallographic analysis at 1.5 A resolution. Authors: Rizzi, M. / Wittenberg, J.B. / Coda, A. / Fasano, M. / Ascenzi, P. / Bolognesi, M. #1: ![]() Title: Crystallization and Preliminary Data for the Ferric Form of Lucina Pectinata Hemoglobin I Authors: Casale, E. / Lionetti, C. / Coda, A. / Merli, A. / Ascenzi, P. / Wittenberg, J.B. / Bolognesi, M. #2: ![]() Title: Hemoglobins of the Lucina Pectinata(Slash)Bacteria Symbiosis. I. Molecular Properties, Kinetics and Equilibria of Reactions with Ligands Authors: Kraus, D.W. / Wittenberg, J.B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 42.4 KB | Display | ![]() |
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PDB format | ![]() | 28.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 791.3 KB | Display | ![]() |
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Full document | ![]() | 793.2 KB | Display | |
Data in XML | ![]() | 9.6 KB | Display | |
Data in CIF | ![]() | 13 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: THE C-TERMINAL STRETCH 136 - 142 HAS NOT BEEN YET CONFIRMED BY CHEMICAL ANALYSIS. |
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Components
#1: Protein | Mass: 14759.440 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Chemical | ChemComp-HEM / |
#3: Water | ChemComp-HOH / |
Sequence details | THE SEQUENCE HAS NOT BEEN REPORTED. IT WAS DETERMINED |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.09 Å3/Da / Density % sol: 41.1 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 4 ℃ / pH: 4.8 / Method: vapor diffusion | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Num. obs: 17354 / % possible obs: 90 % / Rmerge(I) obs: 0.061 |
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Processing
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Refinement | Resolution: 1.5→15 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 1.5→15 Å
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Refine LS restraints |
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Refinement | *PLUS Num. reflection all: 17354 / Rfactor all: 0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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