PROTEIN TRANSPORT / BACTERIAL EFFECTOR / SMALL G PROTEIN / SMALL GTP-BINDING PROTEIN / ARF / ADP-RIBOSYLATION FACTOR 6
Function / homology
Function and homology information
erythrocyte apoptotic process / maintenance of postsynaptic density structure / regulation of dendritic spine development / establishment of epithelial cell polarity / negative regulation of receptor-mediated endocytosis / protein localization to endosome / negative regulation of dendrite development / ruffle assembly / negative regulation of protein localization to cell surface / regulation of Rac protein signal transduction ...erythrocyte apoptotic process / maintenance of postsynaptic density structure / regulation of dendritic spine development / establishment of epithelial cell polarity / negative regulation of receptor-mediated endocytosis / protein localization to endosome / negative regulation of dendrite development / ruffle assembly / negative regulation of protein localization to cell surface / regulation of Rac protein signal transduction / positive regulation of keratinocyte migration / positive regulation of focal adhesion disassembly / regulation of filopodium assembly / endocytic recycling / thioesterase binding / MET receptor recycling / filopodium membrane / protein localization to cell surface / Flemming body / TBC/RABGAPs / cortical actin cytoskeleton organization / positive regulation of actin filament polymerization / hepatocyte apoptotic process / cleavage furrow / regulation of presynapse assembly / synaptic vesicle endocytosis / endocytic vesicle / signaling adaptor activity / vesicle-mediated transport / ruffle / cellular response to nerve growth factor stimulus / small monomeric GTPase / G protein activity / liver development / protein localization to plasma membrane / positive regulation of protein secretion / positive regulation of protein localization to plasma membrane / intracellular protein transport / positive regulation of neuron projection development / recycling endosome membrane / GDP binding / presynapse / Clathrin-mediated endocytosis / nervous system development / cell cortex / early endosome membrane / postsynapse / cell differentiation / cell adhesion / endosome / cell cycle / cell division / cysteine-type endopeptidase activity / focal adhesion / GTPase activity / glutamatergic synapse / GTP binding / Golgi apparatus / extracellular exosome / membrane / plasma membrane / cytosol Similarity search - Function
EspG protein, N-terminal domain / Cysteine protease, VirA/EspG / Cysteine protease, VirA/EspG, N-terminal / EspG protein / ADP-ribosylation factor 6 / small GTPase Arf family profile. / Sar1p-like members of the Ras-family of small GTPases / Small GTPase superfamily, ARF/SAR type / ADP-ribosylation factor family / ARF-like small GTPases; ARF, ADP-ribosylation factor ...EspG protein, N-terminal domain / Cysteine protease, VirA/EspG / Cysteine protease, VirA/EspG, N-terminal / EspG protein / ADP-ribosylation factor 6 / small GTPase Arf family profile. / Sar1p-like members of the Ras-family of small GTPases / Small GTPase superfamily, ARF/SAR type / ADP-ribosylation factor family / ARF-like small GTPases; ARF, ADP-ribosylation factor / Nuclear Transport Factor 2; Chain: A, / Rab subfamily of small GTPases / Small GTP-binding protein domain / P-loop containing nucleotide triphosphate hydrolases / Roll / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
Method to determine structure: MAD / Resolution: 2.5→29.001 Å / Occupancy max: 1 / Occupancy min: 1 / FOM work R set: 0.7427 / SU ML: 0.45 / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: ML Details: THE HIGHER-THAN-AVERAGE RFREE VALUE IS PROBABLY DUE TO THE RELATIVE DEARTH OF LATTICE CONTACTS FOR THE ARF6 MOLECULE, AS EVIDENCED BY WEAK ELECTRON DENSITY FOR THE PORTIONS OF ARF6 THAT ARE ...Details: THE HIGHER-THAN-AVERAGE RFREE VALUE IS PROBABLY DUE TO THE RELATIVE DEARTH OF LATTICE CONTACTS FOR THE ARF6 MOLECULE, AS EVIDENCED BY WEAK ELECTRON DENSITY FOR THE PORTIONS OF ARF6 THAT ARE DISTAL TO THE ESPG-BINDING SITE. THE DENSITY FOR THE PORTIONS OF ARF6 THAT ARE PROXIMAL TO ESPG AND THE MG2+-GTP IS STRONG AND WELL CONNECTED
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.3264
1804
5.16 %
RANDOM
Rwork
0.2228
-
-
-
all
0.2278
34977
-
-
obs
0.2278
34977
97.36 %
-
Solvent computation
Shrinkage radii: 0.95 Å / VDW probe radii: 1.2 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 53.73 Å2 / ksol: 0.316 e/Å3