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- PDB-3pal: IONIC INTERACTIONS WITH PARVALBUMINS. CRYSTAL STRUCTURE DETERMINA... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3pal | ||||||
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Title | IONIC INTERACTIONS WITH PARVALBUMINS. CRYSTAL STRUCTURE DETERMINATION OF PIKE 4.10 PARVALBUMIN IN FOUR DIFFERENT IONIC ENVIRONMENTS | ||||||
![]() | PARVALBUMIN | ||||||
![]() | CALCIUM BINDING PROTEIN | ||||||
Function / homology | ![]() ion binding / axon terminus / axon / calcium ion binding / dendrite / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Declercq, J.P. / Tinant, B. / Parello, J. / Rambaud, J. | ||||||
![]() | ![]() Title: Ionic interactions with parvalbumins. Crystal structure determination of pike 4.10 parvalbumin in four different ionic environments. Authors: Declercq, J.P. / Tinant, B. / Parello, J. / Rambaud, J. #1: ![]() Title: Crystal Structure Determination and Refinement of Pike 4.10 Parvalbumin (Minor Component from Esox Lucius) Authors: Declercq, J.-P. / Tinant, B. / Parello, J. / Etienne, G. / Huber, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 34.3 KB | Display | ![]() |
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PDB format | ![]() | 23.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 417.3 KB | Display | ![]() |
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Full document | ![]() | 421.2 KB | Display | |
Data in XML | ![]() | 7.9 KB | Display | |
Data in CIF | ![]() | 10.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11429.834 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() | ||||
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#2: Chemical | #3: Chemical | ChemComp-MG / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.29 Å3/Da / Density % sol: 62.64 % |
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Crystal grow | *PLUS Temperature: 20 ℃ / Method: vapor diffusion, hanging drop |
Components of the solutions | *PLUS Conc.: 3 mM / Common name: sodium azide |
-Data collection
Reflection | *PLUS Highest resolution: 2.4 Å / Lowest resolution: 9999 Å / Num. obs: 5907 / % possible obs: 71 % / Observed criterion σ(I): 1 / Num. measured all: 12983 / Rmerge(I) obs: 0.096 |
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Reflection shell | *PLUS Highest resolution: 2.4 Å / Lowest resolution: 2.8 Å / % possible obs: 57 % |
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Processing
Software | Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor Rwork: 0.167 / Highest resolution: 2.4 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.4 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 7 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Highest resolution: 2.4 Å / Lowest resolution: 2.8 Å / Rfactor obs: 0.213 |