Entry | Database: PDB / ID: 3mlq |
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Title | Crystal structure of the Thermus thermophilus transcription-repair coupling factor RNA polymerase interacting domain with the Thermus aquaticus RNA polymerase beta1 domain |
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Components | - DNA-directed RNA polymerase subunit beta
- Transcription-repair coupling factor
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Keywords | TRANSFERASE/TRANSCRIPTION / Tudor / TRANSFERASE-TRANSCRIPTION complex |
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Function / homology | Function and homology information
transcription-coupled nucleotide-excision repair, DNA damage recognition / DNA-directed RNA polymerase complex / DNA helicase activity / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / ribonucleoside binding / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / damaged DNA binding / hydrolase activity / DNA-templated transcription ...transcription-coupled nucleotide-excision repair, DNA damage recognition / DNA-directed RNA polymerase complex / DNA helicase activity / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / ribonucleoside binding / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / damaged DNA binding / hydrolase activity / DNA-templated transcription / regulation of DNA-templated transcription / DNA binding / ATP binding / cytoplasmSimilarity search - Function : / Transcription-repair coupling factor / Transcription-repair-coupling factor, C-terminal domain / TRCF-like, C-terminal D7 domain / TRCF domain / TRCF / CarD-like/TRCF, RNAP-interacting domain / CarD-like/TRCF, RNAP-interacting domain superfamily / CarD-like/TRCF RID domain / CarD-like/TRCF domain ...: / Transcription-repair coupling factor / Transcription-repair-coupling factor, C-terminal domain / TRCF-like, C-terminal D7 domain / TRCF domain / TRCF / CarD-like/TRCF, RNAP-interacting domain / CarD-like/TRCF, RNAP-interacting domain superfamily / CarD-like/TRCF RID domain / CarD-like/TRCF domain / Thrombin, subunit H - #170 / DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily / DNA-directed RNA polymerase, beta subunit, external 1 domain / RNA polymerase beta subunit external 1 domain / DNA-directed RNA polymerase beta subunit, bacterial-type / DEAD/DEAH box helicase / DEAD/DEAH box helicase domain / Helicase conserved C-terminal domain / RNA polymerase Rpb2, domain 2 superfamily / RNA polymerase, beta subunit, protrusion / RNA polymerase beta subunit / RNA polymerase Rpb2, domain 2 / RNA polymerase Rpb2, domain 2 / RNA polymerase, beta subunit, conserved site / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerase Rpb2, OB-fold / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerases beta chain signature. / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain / DNA-directed RNA polymerase, subunit 2 / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily / RNA polymerase Rpb2, domain 6 / helicase superfamily c-terminal domain / Superfamilies 1 and 2 helicase C-terminal domain profile. / Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. / DEAD-like helicases superfamily / Helicase, C-terminal / Helicase superfamily 1/2, ATP-binding domain / Thrombin, subunit H / Beta Barrel / P-loop containing nucleoside triphosphate hydrolase / Mainly BetaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_bacteria.gif) Thermus aquaticus (bacteria)
![](img/tx_bacteria.gif) Thermus thermophilus (bacteria) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.91 Å |
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Authors | Darst, S.A. / Westblade, L.F. / Campbell, E.A. |
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Citation | Journal: Nucleic Acids Res. / Year: 2010 Title: Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction. Authors: Westblade, L.F. / Campbell, E.A. / Pukhrambam, C. / Padovan, J.C. / Nickels, B.E. / Lamour, V. / Darst, S.A. |
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History | Deposition | Apr 18, 2010 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Oct 13, 2010 | Provider: repository / Type: Initial release |
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Revision 1.1 | Jul 13, 2011 | Group: Version format compliance |
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Revision 1.2 | Aug 2, 2017 | Group: Refinement description / Source and taxonomy / Category: entity_src_gen / software / Item: _software.classification |
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Revision 1.3 | Jul 17, 2019 | Group: Data collection / Refinement description / Category: software Item: _software.classification / _software.name / _software.version |
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Revision 1.4 | Feb 21, 2024 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ncs_dom_lim / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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Revision 1.5 | Apr 3, 2024 | Group: Refinement description / Category: pdbx_initial_refinement_model |
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