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Open data
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Basic information
Entry | Database: PDB / ID: 3mds | ||||||
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Title | MAGANESE SUPEROXIDE DISMUTASE FROM THERMUS THERMOPHILUS | ||||||
![]() | MANGANESE SUPEROXIDE DISMUTASE | ||||||
![]() | OXIDOREDUCTASE(SUPEROXIDE ACCEPTOR) / OXIDOREDUCTASE | ||||||
Function / homology | ![]() superoxide dismutase / superoxide dismutase activity / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Ludwig, M.L. / Metzger, A.L. / Pattridge, K.A. / Stallings, W.C. | ||||||
![]() | ![]() Title: Manganese superoxide dismutase from Thermus thermophilus. A structural model refined at 1.8 A resolution. Authors: Ludwig, M.L. / Metzger, A.L. / Pattridge, K.A. / Stallings, W.C. #1: ![]() Year: 1992 Title: Iron and Manganese Superoxide Dismutases: Catalytic Inferences from the Structures Molecular Biology of Free Radical Scavenging Systems Authors: Stallings, W.C. / Bull, C. / Fee, J.A. / Lah, M.S. / Ludwig, M.L. #2: ![]() Title: Structure-Function Relationships in Fe-and Mn-Superoxide Dismutases Authors: Stallings, W.C. / Metzger, A.L. / Pattridge, K.A. / Fee, J.A. / Ludwig, M.L. #3: ![]() Title: The Structure of Manganese Superoxide Dismutase from Thermus Thermophilus at 2.4 Angstroms Resolution Authors: Stallings, W.C. / Pattridge, K.A. / Strong, R.K. / Ludwig, M.L. #4: ![]() Title: Manganese and Iron Superoxide Dismutases are Structural Homologs Authors: Stallings, W.C. / Pattridge, K.A. / Strong, R.K. / Ludwig, M.L. | ||||||
History |
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Remark 650 | HELIX ASSIGNMENTS OF SECONDARY STRUCTURE ARE BASED ON THE ALGORITHM OF KABSCH AND SANDER, WITH THE ...HELIX ASSIGNMENTS OF SECONDARY STRUCTURE ARE BASED ON THE ALGORITHM OF KABSCH AND SANDER, WITH THE FOLLOWING EXCEPTIONS: HELICES START WITH THE FIRST RESIDUE HAVING A HELICAL HYDROGEN BOND; SUCCESSIVE 3-10 TURNS ARE GIVEN PRIORITY OVER SHORT 3-10 HELICES. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 95.1 KB | Display | ![]() |
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PDB format | ![]() | 74.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 369.6 KB | Display | ![]() |
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Full document | ![]() | 370.9 KB | Display | |
Data in XML | ![]() | 9 KB | Display | |
Data in CIF | ![]() | 14.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 3 / 2: CIS PROLINE - PRO A 18 / 3: CIS PROLINE - PRO B 3 / 4: CIS PROLINE - PRO B 18 | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.0591, -0.9384, 0.3403), Vector: Details | THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO CHAIN *A*. | |
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Components
#1: Protein | Mass: 23129.295 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Sequence details | THE SEQUENCE ASSIGNS LYS RATHER THAN ILE AT POSITION 69; THE FIT OF THIS RESIDUE WILL BE REINVESTIG | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.23 Å3/Da / Density % sol: 61.89 % |
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Processing
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Refinement | Resolution: 1.8→20 Å / σ(F): 0 Details: THE SIDE CHAIN OF GLU 101 IS ILL-DEFINED IN THE B CHAIN.
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Refinement step | Cycle: LAST / Resolution: 1.8→20 Å
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Refine LS restraints |
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