登録情報 | データベース: PDB / ID: 3kas |
---|
タイトル | Machupo virus GP1 bound to human transferrin receptor 1 |
---|
要素 | - Glycoprotein
- Transferrin receptor protein 1
|
---|
キーワード | VIRAL PROTEIN/ENDOCYTOSIS / Machupo virus / transferrin receptor 1 / arenavirus / Cell membrane / Disulfide bond / Endocytosis / Glycoprotein / Host-virus interaction / Receptor / Secreted / Transmembrane / VIRAL PROTEIN-ENDOCYTOSIS complex |
---|
機能・相同性 | 機能・相同性情報
transferrin receptor activity / postsynaptic recycling endosome membrane / negative regulation of mitochondrial fusion / positive regulation of isotype switching / Transferrin endocytosis and recycling / response to manganese ion / Differentiation of Keratinocytes in Interfollicular Epidermis in Mammalian Skin / response to iron ion / RND1 GTPase cycle / RND2 GTPase cycle ...transferrin receptor activity / postsynaptic recycling endosome membrane / negative regulation of mitochondrial fusion / positive regulation of isotype switching / Transferrin endocytosis and recycling / response to manganese ion / Differentiation of Keratinocytes in Interfollicular Epidermis in Mammalian Skin / response to iron ion / RND1 GTPase cycle / RND2 GTPase cycle / response to copper ion / RHOB GTPase cycle / Golgi Associated Vesicle Biogenesis / RHOC GTPase cycle / RHOJ GTPase cycle / RHOQ GTPase cycle / host cell Golgi membrane / CDC42 GTPase cycle / RHOH GTPase cycle / RHOG GTPase cycle / RHOA GTPase cycle / RAC2 GTPase cycle / RAC3 GTPase cycle / response to retinoic acid / regulation of postsynaptic membrane neurotransmitter receptor levels / transport across blood-brain barrier / receptor-mediated endocytosis of virus by host cell / clathrin-coated pit / positive regulation of B cell proliferation / Hsp70 protein binding / positive regulation of T cell proliferation / response to nutrient / RAC1 GTPase cycle / osteoclast differentiation / cellular response to leukemia inhibitory factor / transferrin transport / acute-phase response / positive regulation of protein-containing complex assembly / clathrin-coated endocytic vesicle membrane / iron ion transport / HFE-transferrin receptor complex / recycling endosome / receptor internalization / multicellular organismal-level iron ion homeostasis / positive regulation of protein localization to nucleus / cellular response to xenobiotic stimulus / recycling endosome membrane / Cargo recognition for clathrin-mediated endocytosis / Clathrin-mediated endocytosis / melanosome / extracellular vesicle / double-stranded RNA binding / virus receptor activity / cytoplasmic vesicle / blood microparticle / basolateral plasma membrane / intracellular iron ion homeostasis / response to hypoxia / early endosome / endosome membrane / positive regulation of canonical NF-kappaB signal transduction / endosome / intracellular signal transduction / host cell endoplasmic reticulum membrane / external side of plasma membrane / intracellular membrane-bounded organelle / fusion of virus membrane with host endosome membrane / viral envelope / positive regulation of gene expression / protein kinase binding / negative regulation of apoptotic process / protein-containing complex binding / virion attachment to host cell / perinuclear region of cytoplasm / host cell plasma membrane / glutamatergic synapse / virion membrane / cell surface / protein homodimerization activity / extracellular space / RNA binding / extracellular exosome / extracellular region / metal ion binding / identical protein binding / membrane / plasma membrane類似検索 - 分子機能 Transferrin receptor protein 1/2, PA domain / Transferrin receptor-like, dimerisation domain / Transferrin receptor-like, dimerisation domain / Transferrin receptor-like, dimerisation domain superfamily / Glutamate carboxypeptidase 2-like / Arenavirus glycoprotein, zinc binding domain / Transferrin receptor-like dimerisation domain / Glucose Oxidase; domain 1 - #30 / Arenavirus glycoprotein / Arenavirus glycoprotein ...Transferrin receptor protein 1/2, PA domain / Transferrin receptor-like, dimerisation domain / Transferrin receptor-like, dimerisation domain / Transferrin receptor-like, dimerisation domain superfamily / Glutamate carboxypeptidase 2-like / Arenavirus glycoprotein, zinc binding domain / Transferrin receptor-like dimerisation domain / Glucose Oxidase; domain 1 - #30 / Arenavirus glycoprotein / Arenavirus glycoprotein / PA domain superfamily / PA domain / PA domain / Transcription Elongation Factor S-II; Chain A / Glucose Oxidase; domain 1 / Peptidase M28 / Peptidase family M28 / Zn peptidases / Aminopeptidase / 3-Layer(bba) Sandwich / Up-down Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 : / PHOSPHATE ION / Transferrin receptor protein 1 / Pre-glycoprotein polyprotein GP complex類似検索 - 構成要素 |
---|
生物種 | Homo sapiens (ヒト)
Machupo virus (ウイルス) |
---|
手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.4 Å |
---|
データ登録者 | Abraham, J. / Corbett, K.D. / Harrison, S.C. |
---|
引用 | ジャーナル: Nat.Struct.Mol.Biol. / 年: 2010 タイトル: Structural basis for receptor recognition by New World hemorrhagic fever arenaviruses. 著者: Abraham, J. / Corbett, K.D. / Farzan, M. / Choe, H. / Harrison, S.C. |
---|
履歴 | 登録 | 2009年10月19日 | 登録サイト: RCSB / 処理サイト: RCSB |
---|
改定 1.0 | 2010年3月9日 | Provider: repository / タイプ: Initial release |
---|
改定 1.1 | 2011年7月13日 | Group: Version format compliance |
---|
改定 2.0 | 2020年7月29日 | Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Database references / Derived calculations / Structure summary カテゴリ: atom_site / atom_site_anisotrop ...atom_site / atom_site_anisotrop / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_struct_special_symmetry / pdbx_validate_close_contact / struct_asym / struct_conn / struct_ref_seq_dif / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _atom_site_anisotrop.U[1][1] / _atom_site_anisotrop.U[1][2] / _atom_site_anisotrop.U[1][3] / _atom_site_anisotrop.U[2][2] / _atom_site_anisotrop.U[2][3] / _atom_site_anisotrop.U[3][3] / _atom_site_anisotrop.id / _atom_site_anisotrop.pdbx_auth_asym_id / _atom_site_anisotrop.pdbx_auth_atom_id / _atom_site_anisotrop.pdbx_auth_comp_id / _atom_site_anisotrop.pdbx_auth_seq_id / _atom_site_anisotrop.pdbx_label_asym_id / _atom_site_anisotrop.pdbx_label_atom_id / _atom_site_anisotrop.pdbx_label_comp_id / _atom_site_anisotrop.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_special_symmetry.label_asym_id / _pdbx_validate_close_contact.auth_asym_id_1 / _pdbx_validate_close_contact.auth_asym_id_2 / _pdbx_validate_close_contact.auth_seq_id_1 / _pdbx_validate_close_contact.auth_seq_id_2 / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details 解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation |
---|
改定 2.1 | 2023年9月6日 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
---|
改定 2.2 | 2024年10月9日 | Group: Structure summary カテゴリ: pdbx_entry_details / pdbx_modification_feature |
---|
|
---|