- PDB-3grz: CRYSTAL STRUCTURE OF ribosomal protein L11 methylase FROM Lactoba... -
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基本情報
登録情報
データベース: PDB / ID: 3grz
タイトル
CRYSTAL STRUCTURE OF ribosomal protein L11 methylase FROM Lactobacillus delbrueckii subsp. bulgaricus
要素
Ribosomal protein L11 methyltransferase
キーワード
TRANSFERASE / METHYLASE / SAM-BINDING DOMAIN / PSI-2 / NYSGXRC / STRUCTURAL GENOMICS / PROTEIN STRUCTURE INITIATIVE / NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS / Methyltransferase
Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #830 / Ribosomal protein L11 methyltransferase / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Vaccinia Virus protein VP39 / Helix non-globular / Special / S-adenosyl-L-methionine-dependent methyltransferase superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta 類似検索 - ドメイン・相同性
Ribosomal protein L11 methyltransferase 類似検索 - 構成要素
THE TARGET WAS EXPRESSED AS A FULL-LENGTH PROTEIN HOWEVER THE N-TERMINAL DOMAIN THAT INCLUDES ...THE TARGET WAS EXPRESSED AS A FULL-LENGTH PROTEIN HOWEVER THE N-TERMINAL DOMAIN THAT INCLUDES RESIDUES FROM 3 TO ABOUT 116 WAS LOST DURING CRYSTALLIZATION LIKELY DUE TO PROTEOLYSIS
プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 0.9791 Å / 相対比: 1
反射
解像度: 2→50 Å / Num. obs: 30326 / % possible obs: 98.1 % / Observed criterion σ(I): -0.5 / 冗長度: 2.1 % / Biso Wilson estimate: 36.872 Å2 / Rsym value: 0.051 / Net I/σ(I): 9.5
反射 シェル
解像度: 2→2.07 Å / 冗長度: 2 % / Rmerge(I) obs: 0.62 / Mean I/σ(I) obs: 1.1 / % possible all: 90.6
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解析
ソフトウェア
名称
バージョン
分類
SHELXD
位相決定
REFMAC
5.3.0034
精密化
DENZO
データ削減
HKL-2000
データスケーリング
精密化
構造決定の手法: 単波長異常分散 / 解像度: 2→20 Å / Cor.coef. Fo:Fc: 0.969 / Cor.coef. Fo:Fc free: 0.946 / SU B: 4.248 / SU ML: 0.118 / 交差検証法: THROUGHOUT / ESU R: 0.162 / ESU R Free: 0.154 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.22461
965
3.2 %
RANDOM
Rwork
0.17356
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obs
0.17523
28941
98.76 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK