TRANSFERASE / STRUCTURAL GENOMICS / PSI-2 / PROTEIN STRUCTURE INITIATIVE / NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM / NYSGXRC / NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS / Isoprene biosynthesis / Nucleotidyltransferase
Function / homology
Function and homology information
D-ribitol-5-phosphate cytidylyltransferase / D-ribitol-5-phosphate cytidylyltransferase activity / poly(ribitol phosphate) teichoic acid biosynthetic process / isoprenoid biosynthetic process / cell wall organization Similarity search - Function
Ribitol-5-phosphate cytidylyltransferase / 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site / Cytidylyltransferase IspD/TarI / 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. / Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A / Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A / Nucleotide-diphospho-sugar transferases / Alpha-Beta Complex / Alpha Beta Similarity search - Domain/homology
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9791 Å / Relative weight: 1
Reflection
Resolution: 2.3→50 Å / Num. obs: 24210 / % possible obs: 98.2 % / Observed criterion σ(I): -5 / Redundancy: 3.8 % / Biso Wilson estimate: 56.31 Å2 / Rmerge(I) obs: 0.074 / Net I/σ(I): 7.4
Reflection shell
Resolution: 2.3→2.38 Å / Redundancy: 3.8 % / Rmerge(I) obs: 0.605 / Mean I/σ(I) obs: 1.5 / % possible all: 100
-
Processing
Software
Name
Version
Classification
SHELX
modelbuilding
REFMAC
5.3.0034
refinement
HKL-2000
datareduction
HKL-2000
datascaling
SHELX
phasing
Refinement
Method to determine structure: SAD / Resolution: 2.3→20 Å / Cor.coef. Fo:Fc: 0.936 / Cor.coef. Fo:Fc free: 0.925 / SU B: 7.641 / SU ML: 0.192 / Cross valid method: THROUGHOUT / ESU R: 0.397 / ESU R Free: 0.264 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.27672
764
3.2 %
RANDOM
Rwork
0.24075
-
-
-
obs
0.24195
22869
98.22 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
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