登録情報 | データベース: PDB / ID: 3d34 |
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タイトル | Structure of the F-spondin domain of mindin |
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要素 | Spondin-2 |
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キーワード | IMMUNE SYSTEM / F-spondin domain of mindin / Cell adhesion / Extracellular matrix / Immune response / Polymorphism / Secreted |
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機能・相同性 | 機能・相同性情報
mast cell mediated immunity / Defective B3GALTL causes PpS / O-glycosylation of TSR domain-containing proteins / opsonization / induction of bacterial agglutination / positive regulation of macrophage cytokine production / defense response to fungus / antigen binding / extracellular matrix / lipopolysaccharide binding ...mast cell mediated immunity / Defective B3GALTL causes PpS / O-glycosylation of TSR domain-containing proteins / opsonization / induction of bacterial agglutination / positive regulation of macrophage cytokine production / defense response to fungus / antigen binding / extracellular matrix / lipopolysaccharide binding / positive regulation of interleukin-6 production / positive regulation of tumor necrosis factor production / cellular response to lipopolysaccharide / defense response to virus / cell adhesion / innate immune response / extracellular exosome / metal ion binding類似検索 - 分子機能 F-spondin domain / Spondin, N-terminal / Spondin, N-terminal domain superfamily / Spondin_N / Spondin domain profile. / : / Spondin-like TSP1 domain / Spondin-like TSP1 domain / Thrombospondin type-1 (TSP1) repeat superfamily / Thrombospondin type-1 (TSP1) repeat profile. ...F-spondin domain / Spondin, N-terminal / Spondin, N-terminal domain superfamily / Spondin_N / Spondin domain profile. / : / Spondin-like TSP1 domain / Spondin-like TSP1 domain / Thrombospondin type-1 (TSP1) repeat superfamily / Thrombospondin type-1 (TSP1) repeat profile. / Thrombospondin type 1 repeats / Thrombospondin type-1 (TSP1) repeat / Immunoglobulin-like / Sandwich / Mainly Beta類似検索 - ドメイン・相同性 |
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生物種 | Homo sapiens (ヒト) |
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手法 | X線回折 / 解像度: 1.8 Å |
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データ登録者 | Li, Y. / Mariuzza, R.A. |
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引用 | ジャーナル: Embo J. / 年: 2009 タイトル: Structure of the F-spondin domain of mindin, an integrin ligand and pattern recognition molecule. 著者: Li, Y. / Cao, C. / Jia, W. / Yu, L. / Mo, M. / Wang, Q. / Huang, Y. / Lim, J.M. / Ishihara, M. / Wells, L. / Azadi, P. / Robinson, H. / He, Y.W. / Zhang, L. / Mariuzza, R.A. |
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履歴 | 登録 | 2008年5月9日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2009年2月17日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年7月13日 | Group: Version format compliance |
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改定 1.2 | 2017年10月25日 | Group: Advisory / Refinement description / カテゴリ: pdbx_unobs_or_zero_occ_atoms / software / Item: _software.classification / _software.name |
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改定 1.3 | 2024年10月30日 | Group: Advisory / Data collection ...Advisory / Data collection / Database references / Derived calculations / Structure summary カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature / pdbx_struct_conn_angle / pdbx_unobs_or_zero_occ_atoms / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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