Resolution: 1.73→1.77 Å / Redundancy: 6.3 % / Rmerge(I) obs: 0.623 / Mean I/σ(I) obs: 2.01 / Num. unique all: 2998 / Χ2: 0.933 / % possible all: 81.5
-
Processing
Software
Name
Version
Classification
NB
DENZO
datareduction
SCALEPACK
datascaling
REFMAC
5.2.0019
refinement
PDB_EXTRACT
3.004
dataextraction
SBC-Collect
datacollection
HKL-3000
datareduction
SHELXD
phasing
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
phasing
HKL-3000
phasing
Refinement
Method to determine structure: SAD / Resolution: 1.73→35.6 Å / Cor.coef. Fo:Fc: 0.971 / Cor.coef. Fo:Fc free: 0.954 / SU B: 4.274 / SU ML: 0.072 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / ESU R: 0.113 / ESU R Free: 0.109 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ELECTRON DENSITY INDICATES THAT AN INDOLE DERIVATIVE, MODELED AS INDOLE-3-CARBOXALDEHYDE (I3A), IS LOCATED IN PUTATIVE ACTIVE SITE OF ...Details: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ELECTRON DENSITY INDICATES THAT AN INDOLE DERIVATIVE, MODELED AS INDOLE-3-CARBOXALDEHYDE (I3A), IS LOCATED IN PUTATIVE ACTIVE SITE OF EACH MONOMER. HOWEVER, AUTHORS DO NOT EXCLUDE POSSIBILITY THAT ANOTHER LIGAND IS PRESENT IN THE STRUCTURE.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.197
2589
5.1 %
RANDOM
Rwork
0.159
-
-
-
all
0.161
51009
-
-
obs
0.161
51009
98.15 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parameters
Biso mean: 24.822 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.79 Å2
0 Å2
0 Å2
2-
-
0.51 Å2
0 Å2
3-
-
-
-1.3 Å2
Refinement step
Cycle: LAST / Resolution: 1.73→35.6 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
3947
0
49
470
4466
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.017
0.022
4351
X-RAY DIFFRACTION
r_angle_refined_deg
1.581
1.975
5909
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.021
5
572
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
39.966
23.948
271
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
12.682
15
827
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
16.628
15
58
X-RAY DIFFRACTION
r_chiral_restr
0.144
0.2
625
X-RAY DIFFRACTION
r_gen_planes_refined
0.007
0.02
3470
X-RAY DIFFRACTION
r_nbd_refined
0.215
0.2
1935
X-RAY DIFFRACTION
r_nbtor_refined
0.304
0.2
2947
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.186
0.2
369
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.245
0.2
99
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.243
0.2
44
X-RAY DIFFRACTION
r_mcbond_it
1.006
1.5
2667
X-RAY DIFFRACTION
r_mcangle_it
1.442
2
4135
X-RAY DIFFRACTION
r_scbond_it
2.397
3
1916
X-RAY DIFFRACTION
r_scangle_it
3.788
4.5
1727
LS refinement shell
Resolution: 1.73→1.77 Å / Total num. of bins used: 20