Entry Database : PDB / ID : 3brt Structure visualization Downloads & linksTitle NEMO/IKK association domain structure ComponentsInhibitor of nuclear factor kappa-B kinase subunit beta,Inhibitor of nuclear factor kappa-B kinase subunit alpha NF-kappa-B essential modulator DetailsKeywords Transferase/Transcription / NEMO / IKK-gamma / FIP3 / IKKAP1 / NF-kB essential modulator / Acetylation / ATP-binding / Cytoplasm / Kinase / Nucleotide-binding / Phosphoprotein / Polymorphism / Serine/threonine-protein kinase / Transferase / Coiled coil / Disease mutation / Ectodermal dysplasia / Host-virus interaction / Nucleus / Transcription / Transcription regulation / Transferase-Transcription COMPLEXFunction / homology Function and homology informationFunction Domain/homology Component
response to acetate / antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent / IkappaB kinase / IkappaB kinase activity / IKBKB deficiency causes SCID / IKBKG deficiency causes anhidrotic ectodermal dysplasia with immunodeficiency (EDA-ID) (via TLR) / response to cholecystokinin / IkappaB kinase complex / establishment of vesicle localization / linear polyubiquitin binding ... response to acetate / antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent / IkappaB kinase / IkappaB kinase activity / IKBKB deficiency causes SCID / IKBKG deficiency causes anhidrotic ectodermal dysplasia with immunodeficiency (EDA-ID) (via TLR) / response to cholecystokinin / IkappaB kinase complex / establishment of vesicle localization / linear polyubiquitin binding / negative regulation of myosin-light-chain-phosphatase activity / I-kappaB phosphorylation / negative regulation of bicellular tight junction assembly / transferrin receptor binding / IkBA variant leads to EDA-ID / toll-like receptor 3 signaling pathway / CD40 receptor complex / TRIF-dependent toll-like receptor signaling pathway / NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10 / RIP-mediated NFkB activation via ZBP1 / regulation of phosphorylation / positive regulation of ubiquitin-dependent protein catabolic process / SUMOylation of immune response proteins / regulation of establishment of endothelial barrier / regulation of tumor necrosis factor-mediated signaling pathway / anoikis / response to hydroperoxide / AKT phosphorylates targets in the cytosol / MyD88-dependent toll-like receptor signaling pathway / interleukin-1-mediated signaling pathway / K63-linked polyubiquitin modification-dependent protein binding / cortical actin cytoskeleton organization / toll-like receptor 4 signaling pathway / negative regulation of NF-kappaB transcription factor activity / positive regulation of T cell receptor signaling pathway / non-canonical NF-kappaB signal transduction / Constitutive Signaling by AKT1 E17K in Cancer / stimulatory C-type lectin receptor signaling pathway / Fc-epsilon receptor signaling pathway / TRAF6 mediated NF-kB activation / Rho protein signal transduction / positive regulation of macroautophagy / protein maturation / skeletal muscle contraction / polyubiquitin modification-dependent protein binding / canonical NF-kappaB signal transduction / response to amino acid / anatomical structure morphogenesis / positive regulation of interferon-alpha production / signaling adaptor activity / stress-activated MAPK cascade / ubiquitin ligase complex / IRAK1 recruits IKK complex / IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation / striated muscle cell differentiation / tumor necrosis factor-mediated signaling pathway / cellular response to cadmium ion / p75NTR recruits signalling complexes / NF-kB is activated and signals survival / MAP3K8 (TPL2)-dependent MAPK1/3 activation / TICAM1, RIP1-mediated IKK complex recruitment / IKK complex recruitment mediated by RIP1 / JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 / TNFR1-induced NF-kappa-B signaling pathway / NIK-->noncanonical NF-kB signaling / Regulation of NF-kappa B signaling / activated TAK1 mediates p38 MAPK activation / protein localization to plasma membrane / Dectin-1 mediated noncanonical NF-kB signaling / Activation of NF-kappaB in B cells / Regulation of TNFR1 signaling / TAK1-dependent IKK and NF-kappa-B activation / NOD1/2 Signaling Pathway / response to virus / PKR-mediated signaling / cytoplasmic side of plasma membrane / response to toxic substance / mitotic spindle / cellular response to virus / CLEC7A (Dectin-1) signaling / FCERI mediated NF-kB activation / spindle pole / cellular response to reactive oxygen species / Interleukin-1 signaling / Ovarian tumor domain proteases / Downstream TCR signaling / cellular response to tumor necrosis factor / positive regulation of NF-kappaB transcription factor activity / T cell receptor signaling pathway / ER-Phagosome pathway / scaffold protein binding / protein-containing complex assembly / peptidyl-serine phosphorylation / positive regulation of canonical NF-kappaB signal transduction / response to lipopolysaccharide / non-specific serine/threonine protein kinase / Ub-specific processing proteases / protein kinase activity / defense response to bacterium / response to xenobiotic stimulus Similarity search - Function Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #2110 / L1 transposable element, trimerization domain / I-kappa-kinase-beta NEMO binding domain / IKBKB, scaffold dimerization domain / IKBKB, scaffold dimerization domain superfamily / I-kappa-kinase-beta NEMO binding domain / IQBAL scaffold dimerization domain / I-kappa-kinase-beta NEMO binding domain / C2H2 type zinc-finger / NF-kappa-B essential modulator NEMO, N-terminal ... Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #2110 / L1 transposable element, trimerization domain / I-kappa-kinase-beta NEMO binding domain / IKBKB, scaffold dimerization domain / IKBKB, scaffold dimerization domain superfamily / I-kappa-kinase-beta NEMO binding domain / IQBAL scaffold dimerization domain / I-kappa-kinase-beta NEMO binding domain / C2H2 type zinc-finger / NF-kappa-B essential modulator NEMO, N-terminal / NF-kappa-B essential modulator NEMO / NEMO, Zinc finger / Zinc finger CCHC NOA-type profile. / NF-kappa-B essential modulator NEMO, CC2-LZ domain / Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Helix non-globular / Special / Ubiquitin-like domain / Ubiquitin-like domain superfamily / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / Up-down Bundle / Mainly Alpha Similarity search - Domain/homology Inhibitor of nuclear factor kappa-B kinase subunit beta / Inhibitor of nuclear factor kappa-B kinase subunit alpha / NF-kappa-B essential modulator Similarity search - ComponentBiological species Homo sapiens (human)Method X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution : 2.25 Å DetailsAuthors Silvian, L.F. CitationJournal : Structure / Year : 2008Title : Structure of a NEMO/IKK-Associating Domain Reveals Architecture of the Interaction Site.Authors : Rushe, M. / Silvian, L. / Bixler, S. / Chen, L.L. / Cheung, A. / Bowes, S. / Cuervo, H. / Berkowitz, S. / Zheng, T. / Guckian, K. / Pellegrini, M. / Lugovskoy, A. History Deposition Dec 21, 2007 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Apr 22, 2008 Provider : repository / Type : Initial releaseRevision 1.1 Jul 13, 2011 Group : Version format complianceRevision 1.2 Aug 2, 2017 Group : Advisory / Source and taxonomy / Category : entity_src_gen / pdbx_unobs_or_zero_occ_atomsRevision 1.3 Oct 20, 2021 Group : Advisory / Database referencesCategory : database_2 / pdbx_unobs_or_zero_occ_atoms / struct_ref_seq_difItem : _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.detailsRevision 1.4 Feb 21, 2024 Group : Data collection / Category : chem_comp_atom / chem_comp_bond
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