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Open data
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Basic information
Entry | Database: PDB / ID: 2xu8 | ||||||
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Title | Structure of Pa1645 | ||||||
![]() | PA1645 | ||||||
![]() | STRUCTURAL GENOMICS / BACTERIAL VIRULENCE | ||||||
Function / homology | Domain of unknown function (DUF5086) / Protein of unknown function DUF5086 / Domain of unknown function (DUF5086) / Cathepsin B; Chain A / Alpha-Beta Complex / Alpha Beta / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Abdelli, W.B. / Moynie, L. / McMahon, S.A. / Liu, H. / Alphey, M.S. / Naismith, J.H. | ||||||
![]() | ![]() Title: The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery Authors: Moynie, L. / Schnell, R. / Mcmahon, S.A. / Sandalova, T. / Boulkerou, W.A. / Schmidberger, J.W. / Alphey, M.S. / Cukier, C. / Duthie, F. / Kopec, J. / Liu, H. / Jacewicz, A. / Hunter, W.N. / ...Authors: Moynie, L. / Schnell, R. / Mcmahon, S.A. / Sandalova, T. / Boulkerou, W.A. / Schmidberger, J.W. / Alphey, M.S. / Cukier, C. / Duthie, F. / Kopec, J. / Liu, H. / Jacewicz, A. / Hunter, W.N. / Naismith, J.H. / Schneider, G. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 157.4 KB | Display | ![]() |
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PDB format | ![]() | 134.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 453.6 KB | Display | ![]() |
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Full document | ![]() | 455.1 KB | Display | |
Data in XML | ![]() | 17.5 KB | Display | |
Data in CIF | ![]() | 24.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4avfC ![]() 4avrC ![]() 4avyC ![]() 4b79C ![]() 4b7cC ![]() 4b7xC ![]() 4b9aC ![]() 4b9eC ![]() 4es6C ![]() 4etrC ![]() 4exaC ![]() 4exbC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 13117.771 Da / Num. of mol.: 3 / Fragment: RESIDUES 20-135 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-SO4 / #3: Water | ChemComp-HOH / | Sequence details | FIRST 19 RESIDUES REMOVED FROM CONSTRUCT | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.2 Å3/Da / Density % sol: 60 % / Description: NONE |
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Crystal grow | pH: 4.5 / Details: pH 4.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Jul 2, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.6 Å / Relative weight: 1 |
Reflection | Resolution: 1.98→89 Å / Num. obs: 35545 / % possible obs: 100 % / Observed criterion σ(I): 0 / Redundancy: 73 % / Rmerge(I) obs: 0.09 / Net I/σ(I): 56.5 |
Reflection shell | Resolution: 1.98→2.03 Å / Redundancy: 74 % / Rmerge(I) obs: 0.75 / Mean I/σ(I) obs: 9 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 1.98→89.07 Å / Cor.coef. Fo:Fc: 0.955 / Cor.coef. Fo:Fc free: 0.949 / SU B: 4.903 / SU ML: 0.077 / Cross valid method: THROUGHOUT / ESU R: 0.137 / ESU R Free: 0.118 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES WITH TLS ADDED.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.255 Å2
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Refinement step | Cycle: LAST / Resolution: 1.98→89.07 Å
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Refine LS restraints |
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