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- PDB-4b7c: Crystal structure of hypothetical protein PA1648 from Pseudomonas... -

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Basic information

Entry
Database: PDB / ID: 4b7c
TitleCrystal structure of hypothetical protein PA1648 from Pseudomonas aeruginosa.
ComponentsPROBABLE OXIDOREDUCTASE
KeywordsOXIDOREDUCTASE / NADP COFACTOR / ROSSMANN FOLD
Function / homology
Function and homology information


oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor / nucleotide binding
Similarity search - Function
Medium-chain dehydrogenase/reductase / Oxidoreductase, N-terminal domain / N-terminal domain of oxidoreductase / Quinone Oxidoreductase; Chain A, domain 1 / Medium-chain alcohol dehydrogenases, catalytic domain / Alcohol dehydrogenase-like, C-terminal / Zinc-binding dehydrogenase / Polyketide synthase, enoylreductase domain / Enoylreductase / GroES-like superfamily ...Medium-chain dehydrogenase/reductase / Oxidoreductase, N-terminal domain / N-terminal domain of oxidoreductase / Quinone Oxidoreductase; Chain A, domain 1 / Medium-chain alcohol dehydrogenases, catalytic domain / Alcohol dehydrogenase-like, C-terminal / Zinc-binding dehydrogenase / Polyketide synthase, enoylreductase domain / Enoylreductase / GroES-like superfamily / NAD(P)-binding Rossmann-like Domain / NAD(P)-binding domain superfamily / Alpha-Beta Complex / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta
Similarity search - Domain/homology
: / Probable oxidoreductase
Similarity search - Component
Biological speciesPSEUDOMONAS AERUGINOSA PA01 (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.1 Å
AuthorsAlphey, M.S. / McMahon, S.A. / Duthie, F.G. / Naismith, J.H.
CitationJournal: Acta Crystallogr.,Sect.F / Year: 2013
Title: The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery
Authors: Moynie, L. / Schnell, R. / Mcmahon, S.A. / Sandalova, T. / Boulkerou, W.A. / Schmidberger, J.W. / Alphey, M.S. / Cukier, C. / Duthie, F. / Kopec, J. / Liu, H. / Jacewicz, A. / Hunter, W.N. / ...Authors: Moynie, L. / Schnell, R. / Mcmahon, S.A. / Sandalova, T. / Boulkerou, W.A. / Schmidberger, J.W. / Alphey, M.S. / Cukier, C. / Duthie, F. / Kopec, J. / Liu, H. / Jacewicz, A. / Hunter, W.N. / Naismith, J.H. / Schneider, G.
History
DepositionAug 17, 2012Deposition site: PDBE / Processing site: PDBE
Revision 1.0Jan 9, 2013Provider: repository / Type: Initial release
Revision 1.1Jan 23, 2013Group: Database references
Revision 1.2Dec 20, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Other / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_database_status / pdbx_initial_refinement_model / struct_ncs_dom_lim / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.status_code_sf / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: PROBABLE OXIDOREDUCTASE
B: PROBABLE OXIDOREDUCTASE
C: PROBABLE OXIDOREDUCTASE
D: PROBABLE OXIDOREDUCTASE
E: PROBABLE OXIDOREDUCTASE
F: PROBABLE OXIDOREDUCTASE
G: PROBABLE OXIDOREDUCTASE
H: PROBABLE OXIDOREDUCTASE
I: PROBABLE OXIDOREDUCTASE
J: PROBABLE OXIDOREDUCTASE
K: PROBABLE OXIDOREDUCTASE
L: PROBABLE OXIDOREDUCTASE
hetero molecules


Theoretical massNumber of molelcules
Total (without water)436,99317
Polymers436,01712
Non-polymers9765
Water17,583976
1
A: PROBABLE OXIDOREDUCTASE
B: PROBABLE OXIDOREDUCTASE


Theoretical massNumber of molelcules
Total (without water)72,6692
Polymers72,6692
Non-polymers00
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area2590 Å2
ΔGint-15.7 kcal/mol
Surface area27130 Å2
MethodPISA
2
C: PROBABLE OXIDOREDUCTASE
D: PROBABLE OXIDOREDUCTASE
hetero molecules


Theoretical massNumber of molelcules
Total (without water)72,8653
Polymers72,6692
Non-polymers1951
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area3050 Å2
ΔGint-11.4 kcal/mol
Surface area27130 Å2
MethodPISA
3
E: PROBABLE OXIDOREDUCTASE
F: PROBABLE OXIDOREDUCTASE
hetero molecules


Theoretical massNumber of molelcules
Total (without water)72,8653
Polymers72,6692
Non-polymers1951
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area2890 Å2
ΔGint-12.8 kcal/mol
Surface area27130 Å2
MethodPISA
4
G: PROBABLE OXIDOREDUCTASE
H: PROBABLE OXIDOREDUCTASE
hetero molecules


Theoretical massNumber of molelcules
Total (without water)73,0604
Polymers72,6692
Non-polymers3902
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area3350 Å2
ΔGint-6.7 kcal/mol
Surface area26760 Å2
MethodPISA
5
I: PROBABLE OXIDOREDUCTASE
J: PROBABLE OXIDOREDUCTASE
hetero molecules


Theoretical massNumber of molelcules
Total (without water)72,8653
Polymers72,6692
Non-polymers1951
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area2760 Å2
ΔGint-10.9 kcal/mol
Surface area26770 Å2
MethodPISA
6
K: PROBABLE OXIDOREDUCTASE
L: PROBABLE OXIDOREDUCTASE


Theoretical massNumber of molelcules
Total (without water)72,6692
Polymers72,6692
Non-polymers00
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area2150 Å2
ΔGint-15.8 kcal/mol
Surface area26700 Å2
MethodPISA
Unit cell
Length a, b, c (Å)170.930, 177.090, 181.660
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21B
12A
22C
13A
23D
14A
24E
15A
25F
16A
26G
17A
27H
18A
28I
19A
29J
110A
210K
111A
211L
112B
212C
113B
213D
114B
214E
115B
215F
116B
216G
117B
217H
118B
218I
119B
219J
120B
220K
121B
221L
122C
222D
123C
223E
124C
224F
125C
225G
126C
226H
127C
227I
128C
228J
129C
229K
130C
230L
131D
231E
132D
232F
133D
233G
134D
234H
135D
235I
136D
236J
137D
237K
138D
238L
139E
239F
140E
240G
141E
241H
142E
242I
143E
243J
144E
244K
145E
245L
146F
246G
147F
247H
148F
248I
149F
249J
150F
250K
151F
251L
152G
252H
153G
253I
154G
254J
155G
255K
156G
256L
157H
257I
158H
258J
159H
259K
160H
260L
161I
261J
162I
262K
163I
263L
164J
264K
165J
265L
166K
266L

NCS domain segments:

Component-ID: _ / End auth comp-ID: VAL / End label comp-ID: VAL / Refine code: _

Dom-IDEns-IDBeg auth comp-IDBeg label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11GLNGLNAA4 - 3346 - 336
21GLNGLNBB4 - 3346 - 336
12GLNGLNAA4 - 3346 - 336
22GLNGLNCC4 - 3346 - 336
13GLNGLNAA4 - 3346 - 336
23GLNGLNDD4 - 3346 - 336
14GLNGLNAA4 - 3346 - 336
24GLNGLNEE4 - 3346 - 336
15GLNGLNAA4 - 3346 - 336
25GLNGLNFF4 - 3346 - 336
16GLNGLNAA4 - 3346 - 336
26GLNGLNGG4 - 3346 - 336
17GLNGLNAA4 - 3346 - 336
27GLNGLNHH4 - 3346 - 336
18GLNGLNAA4 - 3346 - 336
28GLNGLNII4 - 3346 - 336
19GLNGLNAA4 - 3346 - 336
29GLNGLNJJ4 - 3346 - 336
110PROPROAA19 - 33421 - 336
210ILEILEKK5 - 3347 - 336
111GLNGLNAA4 - 3346 - 336
211GLNGLNLL4 - 3346 - 336
112GLNGLNBB4 - 3346 - 336
212GLNGLNCC4 - 3346 - 336
113GLNGLNBB4 - 3346 - 336
213GLNGLNDD4 - 3346 - 336
114GLNGLNBB4 - 3346 - 336
214GLNGLNEE4 - 3346 - 336
115GLNGLNBB4 - 3346 - 336
215GLNGLNFF4 - 3346 - 336
116GLNGLNBB4 - 3346 - 336
216GLNGLNGG4 - 3346 - 336
117GLNGLNBB4 - 3346 - 336
217GLNGLNHH4 - 3346 - 336
118GLNGLNBB4 - 3346 - 336
218GLNGLNII4 - 3346 - 336
119GLNGLNBB4 - 3346 - 336
219GLNGLNJJ4 - 3346 - 336
120PROPROBB19 - 33421 - 336
220ILEILEKK5 - 3347 - 336
121GLNGLNBB4 - 3346 - 336
221GLNGLNLL4 - 3346 - 336
122GLNGLNCC4 - 3346 - 336
222GLNGLNDD4 - 3346 - 336
123GLNGLNCC4 - 3346 - 336
223GLNGLNEE4 - 3346 - 336
124GLNGLNCC4 - 3346 - 336
224GLNGLNFF4 - 3346 - 336
125GLNGLNCC4 - 3346 - 336
225GLNGLNGG4 - 3346 - 336
126GLNGLNCC4 - 3346 - 336
226GLNGLNHH4 - 3346 - 336
127GLNGLNCC4 - 3346 - 336
227GLNGLNII4 - 3346 - 336
128GLNGLNCC4 - 3346 - 336
228GLNGLNJJ4 - 3346 - 336
129PROPROCC19 - 33421 - 336
229ILEILEKK5 - 3347 - 336
130GLNGLNCC4 - 3346 - 336
230GLNGLNLL4 - 3346 - 336
131GLNGLNDD4 - 3346 - 336
231GLNGLNEE4 - 3346 - 336
132GLNGLNDD4 - 3346 - 336
232GLNGLNFF4 - 3346 - 336
133GLNGLNDD4 - 3346 - 336
233GLNGLNGG4 - 3346 - 336
134GLNGLNDD4 - 3346 - 336
234GLNGLNHH4 - 3346 - 336
135GLNGLNDD4 - 3346 - 336
235GLNGLNII4 - 3346 - 336
136GLNGLNDD4 - 3346 - 336
236GLNGLNJJ4 - 3346 - 336
137PROPRODD19 - 33421 - 336
237ILEILEKK5 - 3347 - 336
138GLNGLNDD4 - 3346 - 336
238GLNGLNLL4 - 3346 - 336
139GLNGLNEE4 - 3346 - 336
239GLNGLNFF4 - 3346 - 336
140GLNGLNEE4 - 3346 - 336
240GLNGLNGG4 - 3346 - 336
141GLNGLNEE4 - 3346 - 336
241GLNGLNHH4 - 3346 - 336
142GLNGLNEE4 - 3346 - 336
242GLNGLNII4 - 3346 - 336
143GLNGLNEE4 - 3346 - 336
243GLNGLNJJ4 - 3346 - 336
144PROPROEE19 - 33421 - 336
244ILEILEKK5 - 3347 - 336
145GLNGLNEE4 - 3346 - 336
245GLNGLNLL4 - 3346 - 336
146GLNGLNFF4 - 3346 - 336
246GLNGLNGG4 - 3346 - 336
147GLNGLNFF4 - 3346 - 336
247GLNGLNHH4 - 3346 - 336
148GLNGLNFF4 - 3346 - 336
248GLNGLNII4 - 3346 - 336
149GLNGLNFF4 - 3346 - 336
249GLNGLNJJ4 - 3346 - 336
150PROPROFF19 - 33421 - 336
250ILEILEKK5 - 3347 - 336
151GLNGLNFF4 - 3346 - 336
251GLNGLNLL4 - 3346 - 336
152GLNGLNGG4 - 3346 - 336
252GLNGLNHH4 - 3346 - 336
153GLNGLNGG4 - 3346 - 336
253GLNGLNII4 - 3346 - 336
154GLNGLNGG4 - 3346 - 336
254GLNGLNJJ4 - 3346 - 336
155PROPROGG19 - 33421 - 336
255ILEILEKK5 - 3347 - 336
156GLNGLNGG4 - 3346 - 336
256GLNGLNLL4 - 3346 - 336
157GLNGLNHH4 - 3346 - 336
257GLNGLNII4 - 3346 - 336
158GLNGLNHH4 - 3346 - 336
258GLNGLNJJ4 - 3346 - 336
159PROPROHH19 - 33421 - 336
259ILEILEKK5 - 3347 - 336
160GLNGLNHH4 - 3346 - 336
260GLNGLNLL4 - 3346 - 336
161GLNGLNII4 - 3346 - 336
261GLNGLNJJ4 - 3346 - 336
162PROPROII19 - 33421 - 336
262ILEILEKK5 - 3347 - 336
163GLNGLNII4 - 3346 - 336
263GLNGLNLL4 - 3346 - 336
164ILEILEJJ5 - 3347 - 336
264ILEILEKK5 - 3347 - 336
165GLNGLNJJ4 - 3346 - 336
265GLNGLNLL4 - 3346 - 336
166ILEILEKK5 - 3347 - 336
266PROPROLL19 - 33421 - 336

NCS ensembles :
ID
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66

NCS oper:
IDCodeMatrixVector
1given(-0.5459, -0.6686, 0.5049), (-0.6308, -0.0686, -0.7729), (0.5515, -0.7404, -0.3843)74.0595, -3.3048, -67.6184
2given(0.5592, -0.8179, -0.1353), (0.5893, 0.5069, -0.6291), (0.5831, 0.2721, 0.7655)22.3866, -73.85, -82.567
3given(-0.4001, 0.3057, 0.864), (-0.8475, 0.2354, -0.4757), (-0.3488, -0.9226, 0.1649)68.4916, 51.8811, 29.6329
4given(-0.9932, 0.0231, 0.1137), (0.1138, 0.0002, 0.9935), (0.0229, 0.9997, -0.0029)121.443, -53.1585, 44.9658
5given(0.529, 0.4884, -0.694), (0.5755, -0.8075, -0.1295), (-0.6236, -0.3309, -0.7083)62.2351, -111.3934, 23.8313
6given(0.297, -0.3573, -0.8855), (-0.3434, -0.9053, 0.2501), (-0.891, 0.2298, -0.3916)62.4838, -19.8339, 99.3063
7given(-0.4364, 0.8863, 0.1547), (0.5373, 0.1188, 0.835), (0.7217, 0.4475, -0.5281)106.1449, -118.8834, -51.915
8given(0.4835, 0.0839, 0.8713), (-0.4315, 0.8889, 0.1539), (-0.7616, -0.4504, 0.466)14.2862, -25.1302, -3.6103
9given(-0.4051, -0.8351, -0.3721), (0.3186, 0.2525, -0.9136), (0.8569, -0.4887, 0.1637)83.3607, -7.9571, -38.4328
10given(-0.5871, -0.0396, -0.8085), (-0.6332, -0.5998, 0.4892), (-0.5043, 0.7992, 0.327)130.0529, -47.606, 7.6089
11given(0.5199, 0.7979, 0.3051), (0.7977, -0.5812, 0.1607), (0.3055, 0.1598, -0.9387)35.859, -83.5396, 38.8478

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Components

#1: Protein
PROBABLE OXIDOREDUCTASE / PA1648 MEDIUM CHAIN DEHYDROGENASE/REDUCTASE


Mass: 36334.738 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) PSEUDOMONAS AERUGINOSA PA01 (bacteria) / Plasmid: PDEST14 / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21(DE3) / Variant (production host): C43 / References: UniProt: B7UV73, UniProt: Q9I377*PLUS
#2: Chemical
ChemComp-MES / 2-(N-MORPHOLINO)-ETHANESULFONIC ACID


Mass: 195.237 Da / Num. of mol.: 5 / Source method: obtained synthetically / Formula: C6H13NO4S / Comment: pH buffer*YM
#3: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 976 / Source method: isolated from a natural source / Formula: H2O

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 3.16 Å3/Da / Density % sol: 61.2 % / Description: NONE
Crystal growpH: 6.5
Details: 0.9 M NA CITRATE, 0.1 M MES PH 6.5, 0.1 M MGSO4, 10 % GLYCEROL

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Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: Diamond / Beamline: I03 / Wavelength: 0.97
DetectorType: ADSC QUANTUM 315 / Detector: CCD / Date: Jul 2, 2010
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97 Å / Relative weight: 1
ReflectionResolution: 2.09→73.06 Å / Num. obs: 318966 / % possible obs: 99.2 % / Observed criterion σ(I): 2 / Redundancy: 4.9 % / Biso Wilson estimate: 39 Å2 / Rmerge(I) obs: 0.05 / Net I/σ(I): 20.1
Reflection shellResolution: 2.09→2.15 Å / Redundancy: 4.9 % / Rmerge(I) obs: 0.66 / Mean I/σ(I) obs: 2.4 / % possible all: 99.1

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Processing

Software
NameVersionClassification
REFMAC5.6.0117refinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: PDB ENTRY 2J3H
Resolution: 2.1→73.064 Å / Cor.coef. Fo:Fc: 0.944 / Cor.coef. Fo:Fc free: 0.93 / SU B: 4.694 / SU ML: 0.124 / Cross valid method: THROUGHOUT / ESU R: 0.195 / ESU R Free: 0.165 / Stereochemistry target values: MAXIMUM LIKELIHOOD
Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. AN UNUSUALLY SHORT DISTANCE IS OBSERVED BETWEEN TYR 45 AND ASN 202 OF TWO SYMMETRY-RELATED CHAINS. THE ELECTRON DENSITY FOR THE TYR ...Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. AN UNUSUALLY SHORT DISTANCE IS OBSERVED BETWEEN TYR 45 AND ASN 202 OF TWO SYMMETRY-RELATED CHAINS. THE ELECTRON DENSITY FOR THE TYR HYDROXYL IS NOT WELL DEFINED WE CANNOT EXPLAIN WHY THIS SHOULD BE AS THIS RESIDUE APPEARS TO BE UNPROBLEMATIC IN ALL OTHER CHAINS.
RfactorNum. reflection% reflectionSelection details
Rfree0.2428 15989 5.12 %RANDOM
Rwork0.2227 ---
obs0.224 316491 99.095 %-
Solvent computationIon probe radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL PLUS MASK
Displacement parametersBiso mean: 41.087 Å2
Baniso -1Baniso -2Baniso -3
1-0.838 Å20 Å20 Å2
2---0.754 Å20 Å2
3----0.084 Å2
Refinement stepCycle: LAST / Resolution: 2.1→73.064 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms29081 0 60 976 30117
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0090.01929682
X-RAY DIFFRACTIONr_bond_other_d0.0080.0220682
X-RAY DIFFRACTIONr_angle_refined_deg1.3621.98940047
X-RAY DIFFRACTIONr_angle_other_deg1.608350299
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.29253798
X-RAY DIFFRACTIONr_dihedral_angle_2_deg36.93323.7691255
X-RAY DIFFRACTIONr_dihedral_angle_3_deg14.589155044
X-RAY DIFFRACTIONr_dihedral_angle_4_deg19.74115218
X-RAY DIFFRACTIONr_chiral_restr0.0870.24394
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.02133244
X-RAY DIFFRACTIONr_gen_planes_other0.0060.026054
X-RAY DIFFRACTIONr_nbd_refined0.2150.26549
X-RAY DIFFRACTIONr_nbd_other0.3680.2136
X-RAY DIFFRACTIONr_nbtor_refined0.1780.214145
X-RAY DIFFRACTIONr_nbtor_other
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.120.2691
X-RAY DIFFRACTIONr_xyhbond_nbd_other0.070.22
X-RAY DIFFRACTIONr_metal_ion_refined
X-RAY DIFFRACTIONr_metal_ion_other
X-RAY DIFFRACTIONr_symmetry_vdw_refined
X-RAY DIFFRACTIONr_symmetry_vdw_other
X-RAY DIFFRACTIONr_symmetry_hbond_refined
X-RAY DIFFRACTIONr_symmetry_hbond_other
X-RAY DIFFRACTIONr_symmetry_metal_ion_refined
X-RAY DIFFRACTIONr_symmetry_metal_ion_other
X-RAY DIFFRACTIONr_mcbond_it2.2984.76129682
X-RAY DIFFRACTIONr_mcbond_other0.5384.91320682
X-RAY DIFFRACTIONr_mcangle_it3.6527.08540046
X-RAY DIFFRACTIONr_mcangle_other
X-RAY DIFFRACTIONr_scbond_it6.39714.51810315
X-RAY DIFFRACTIONr_scbond_other
X-RAY DIFFRACTIONr_scangle_it5.4723.03322269
X-RAY DIFFRACTIONr_scangle_other
X-RAY DIFFRACTIONr_long_range_B_refined
X-RAY DIFFRACTIONr_long_range_B_other
X-RAY DIFFRACTIONr_rigid_bond_restr
X-RAY DIFFRACTIONr_sphericity_free
X-RAY DIFFRACTIONr_sphericity_bonded
Refine LS restraints NCS

Refine-ID: X-RAY DIFFRACTION / Type: interatomic distance / Weight position: 0.05

Ens-IDDom-IDAuth asym-IDNumberRms dev position (Å)
11A113570.12
12B113570.12
21A111370.13
22C111370.13
31A113200.12
32D113200.12
41A113240.12
42E113240.12
51A112750.13
52F112750.13
61A113070.12
62G113070.12
71A111360.12
72H111360.12
81A112380.13
82I112380.13
91A105530.11
92J105530.11
101A95310.13
102K95310.13
111A114410.12
112L114410.12
121B113150.12
122C113150.12
131B113430.12
132D113430.12
141B111740.12
142E111740.12
151B114900.11
152F114900.11
161B113040.12
162G113040.12
171B112740.1
172H112740.1
181B113010.12
182I113010.12
191B107180.1
192J107180.1
201B96270.12
202K96270.12
211B114280.12
212L114280.12
221C111050.13
222D111050.13
231C111280.13
232E111280.13
241C112480.12
242F112480.12
251C112060.12
252G112060.12
261C110800.12
262H110800.12
271C112110.12
272I112110.12
281C105880.12
282J105880.12
291C96270.12
292K96270.12
301C112950.12
302L112950.12
311D112080.11
312E112080.11
321D115430.1
322F115430.1
331D114890.1
332G114890.1
341D113080.11
342H113080.11
351D112510.12
352I112510.12
361D106790.1
362J106790.1
371D95990.12
372K95990.12
381D116140.1
382L116140.1
391E111830.11
392F111830.11
401E112070.11
402G112070.11
411E110790.12
412H110790.12
421E111470.12
422I111470.12
431E105620.1
432J105620.1
441E95760.12
442K95760.12
451E113030.11
452L113030.11
461F115030.09
462G115030.09
471F112650.11
472H112650.11
481F113410.11
482I113410.11
491F107450.11
492J107450.11
501F96270.11
502K96270.11
511F114260.11
512L114260.11
521G112810.1
522H112810.1
531G113310.12
532I113310.12
541G106080.1
542J106080.1
551G95860.12
552K95860.12
561G114660.1
562L114660.1
571H112850.11
572I112850.11
581H105800.1
582J105800.1
591H95910.11
592K95910.11
601H112720.11
602L112720.11
611I105430.11
612J105430.11
621I95850.12
622K95850.12
631I113800.11
632L113800.11
641J100210.11
642K100210.11
651J107760.1
652L107760.1
661K96570.12
662L96570.12
LS refinement shellResolution: 2.1→2.155 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.307 1135 -
Rwork0.309 21282 -
obs--98.967 %

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