- PDB-2w23: Structure of mutant W169Y of Pleurotus eryngii versatile peroxida... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2w23
Title
Structure of mutant W169Y of Pleurotus eryngii versatile peroxidase (VP)
Components
VERSATILE PEROXIDASE VPL2
Keywords
OXIDOREDUCTASE / ORGANIC RADICAL / PROTEIN RADICALS / LIGNIN DEGRADATION / MANGANESE PEROXIDASE / ELECTRON TRANSFER / HYDROGEN PEROXIDE / IRON / HEME / CALCIUM / ZYMOGEN / SECRETED / MANGANESE / PEROXIDASE / GLYCOPROTEIN / METAL-BINDING
Function / homology
Function and homology information
versatile peroxidase / reactive-black-5:hydrogen-peroxide oxidoreductase activity / manganese peroxidase activity / lignin catabolic process / response to reactive oxygen species / hydrogen peroxide catabolic process / cellular response to oxidative stress / heme binding / extracellular region / metal ion binding Similarity search - Function
Resolution: 1.94→31.01 Å / Cor.coef. Fo:Fc: 0.96 / Cor.coef. Fo:Fc free: 0.942 / SU B: 2.073 / SU ML: 0.062 / Cross valid method: THROUGHOUT / ESU R: 0.103 / ESU R Free: 0.103 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.175
1697
5.1 %
RANDOM
Rwork
0.142
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obs
0.144
31688
99.8 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK