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Open data
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Basic information
Entry | Database: PDB / ID: 2vga | ||||||
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Title | The structure of Vaccinia virus A41 | ||||||
![]() | PROTEIN A41 | ||||||
![]() | VIRAL PROTEIN / IMMUNOMODULATOR / CHEMOKINE BINDING PROTEIN / GLYCOPROTEIN / EARLY PROTEIN | ||||||
Function / homology | ![]() : / virus-mediated perturbation of host defense response => GO:0019049 / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Bahar, M.W. / Kenyon, J.C. / Putz, M.M. / Abrescia, N.G.A. / Pease, J.E. / Wise, E.L. / Stuart, D.I. / Smith, G.L. / Grimes, J.M. | ||||||
![]() | ![]() Title: Structure and Function of A41, a Vaccinia Virus Chemokine Binding Protein. Authors: Bahar, M.W. / Kenyon, J.C. / Putz, M.M. / Abrescia, N.G.A. / Pease, J.E. / Wise, E.L. / Stuart, D.I. / Smith, G.L. / Grimes, J.M. | ||||||
History |
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Remark 700 | SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 52.4 KB | Display | ![]() |
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PDB format | ![]() | 40.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 402 KB | Display | ![]() |
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Full document | ![]() | 402.8 KB | Display | |
Data in XML | ![]() | 6.3 KB | Display | |
Data in CIF | ![]() | 9.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 23768.859 Da / Num. of mol.: 1 / Fragment: RESIDUES 21-219 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.34 Å3/Da / Density % sol: 47.09 % / Description: DATA COLLECTED ON BM14 FOR MAD EXPERIMENT |
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Crystal grow | Details: 0.2 M POTASSIUM FLUORIDE, 20 % POLYETHYLENE GLYCOL 3350. |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.931 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→30 Å / Num. obs: 17533 / % possible obs: 99.9 % / Observed criterion σ(I): 0 / Redundancy: 7.7 % / Rmerge(I) obs: 0.08 / Net I/σ(I): 25.7 |
Reflection shell | Resolution: 1.9→2 Å / Redundancy: 7 % / Rmerge(I) obs: 0.88 / Mean I/σ(I) obs: 2.4 / % possible all: 99.8 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 1.9→50.38 Å / Cor.coef. Fo:Fc: 0.966 / Cor.coef. Fo:Fc free: 0.94 / SU B: 10.302 / SU ML: 0.149 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / ESU R: 0.168 / ESU R Free: 0.162 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 27.02 Å2
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Refinement step | Cycle: LAST / Resolution: 1.9→50.38 Å
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Refine LS restraints |
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