- PDB-2vbm: Tailspike protein of bacteriophage Sf6 complexed with tetrasaccharide -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2vbm
Title
Tailspike protein of bacteriophage Sf6 complexed with tetrasaccharide
Components
TAILSPIKE-PROTEIN
Keywords
VIRAL PROTEIN / VIRAL ADHESION PROTEIN / HYDROLASE / TAILSPIKE / ENDORHAMNOSIDASE / RIGHT-HANDED PARALLEL BETA-HELIX
Function / homology
Function and homology information
endo-1,3-alpha-L-rhamnosidase activity / symbiont entry into host cell via disruption of host cell envelope lipopolysaccharide / virus tail, fiber / symbiont entry into host cell via disruption of host cell envelope / symbiont entry into host / Hydrolases; Glycosylases; Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds / metabolic process / virion attachment to host cell Similarity search - Function
SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED.
Resolution: 2→47.67 Å / Cor.coef. Fo:Fc: 0.925 / Cor.coef. Fo:Fc free: 0.89 / SU B: 7.392 / SU ML: 0.107 / Cross valid method: THROUGHOUT / ESU R: 0.164 / ESU R Free: 0.153 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.232
2110
5.1 %
RANDOM
Rwork
0.19
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obs
0.192
39641
99.8 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK