[English] 日本語
![](img/lk-miru.gif)
- PDB-2tra: RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 2tra | ||||||
---|---|---|---|---|---|---|---|
Title | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | ||||||
![]() | TRNAASP | ||||||
![]() | T-RNA / SINGLE STRAND / LOOPS | ||||||
Function / homology | SPERMINE / RNA / RNA (> 10)![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Westhof, E. / Dumas, P. / Moras, D. | ||||||
![]() | ![]() Title: Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. Authors: Westhof, E. / Dumas, P. / Moras, D. #1: ![]() Title: Hydration of Transfer RNA Molecules. A Crystallographic Study Authors: Westhof, E. / Dumas, P. / Moras, D. #2: ![]() Title: Thee-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination Authors: Comarmond, M.B. / Giege, R. / Thierry, J.C. / Moras, D. / Fischer, J. #3: ![]() Title: Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP, a Model for T-RNA-M-RNA Recognition Authors: Moras, D. / Dock, A.-C. / Dumas, P. / Westhof, E. / Romby, P. / Ebel, J.-P. / Giege, R. #4: ![]() Title: Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA Authors: Westhof, E. / Dumas, P. / Moras, D. #5: ![]() Title: Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates Authors: Dumas, P. / Ebel, J.P. / Giege, R. / Moras, D. / Thierry, J.C. / Westhof, E. #6: ![]() Title: Loop Stereochemistry and Dynamics in Transfer RNA Authors: Westhof, E. / Dumas, P. / Moras, D. #7: ![]() Title: Crystal Structure of Yeast T-RNA-ASP Authors: Moras, D. / Comarmond, M.B. / Fischer, J. / Weiss, R. / Thierry, J.C. / Ebel, J.P. / Giege, R. #8: ![]() Title: Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA Authors: Giege, R. / Moras, D. / Thierry, J.C. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 59.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 41.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
| ||||||||
Components on special symmetry positions |
|
-
Components
#1: RNA chain | Mass: 24181.369 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
---|---|
#2: Chemical | ChemComp-SPM / |
#3: Chemical | ChemComp-MG / |
#4: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 3.21 Å3/Da / Density % sol: 61.66 % |
---|---|
Crystal grow | *PLUS Method: unknown |
-
Processing
Software | Name: NUCLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 3→10 Å / σ(F): 2 /
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→10 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 3 Å / Lowest resolution: 10 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
|