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- PDB-1vtq: THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETE... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1vtq | ||||||
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Title | THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION | ||||||
![]() | T-RNA-ASP | ||||||
![]() | RNA / T-RNA / SINGLE STRAND / LOOPS | ||||||
Function / homology | RNA / RNA (> 10)![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() | ||||||
![]() | Comarmond, M.B. / Giege, R. / Thierry, J.C. / Moras, D. / Fischer, J. | ||||||
![]() | ![]() Title: Three-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination Authors: Comarmond, M.B. / Giege, R. / Thierry, J.C. / Moras, D. / Fischer, J. #1: ![]() Title: Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP II, a Model for T-RNA-M-RNA Recognition Authors: Moras, D. / Dock, A.-C. / Dumas, P. / Westhof, E. / Romby, P. / Ebel, J.-P. / Giege, R. #2: ![]() Title: Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA Authors: Westhof, E. / Dumas, P. / Moras, D. #3: ![]() Title: Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates Authors: Dumas, P. / Ebel, J.P. / Giege, R. / Moras, D. / Thierry, J.C. / Westhof, E. #4: ![]() Title: Loop Stereochemistry and Dynamics in Transfer RNA Authors: Westhof, E. / Dumas, P. / Moras, D. #5: ![]() Title: Crystal Structure of Yeast T-RNA-ASP Authors: Moras, D. / Comarmond, M.B. / Fischer, J. / Weiss, R. / Thierry, J.C. / Ebel, J.P. / Giege, R. #6: ![]() Title: Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA Authors: Giege, R. / Moras, D. / Thierry, J.C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 48.6 KB | Display | ![]() |
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PDB format | ![]() | 32.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 344.6 KB | Display | ![]() |
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Full document | ![]() | 379.5 KB | Display | |
Data in XML | ![]() | 7.9 KB | Display | |
Data in CIF | ![]() | 9.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: RNA chain | Mass: 24181.369 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.17 Å3/Da / Density % sol: 61.18 % |
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-Data collection
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 3→10 Å / σ(F): 2 Details: TWO NON-ISOMORPHOUS INDEPENDENT CRYSTAL FORMS, REFERRED TO AS A FORM AND B FORM, HAVE BEEN GROWN AND SOLVED INDEPENDENTLY. THE COORDINATES PRESENTED IN THIS ENTRY ARE FOR THE B FORM.
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Refinement step | Cycle: LAST / Resolution: 3→10 Å
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