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- PDB-3tra: RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3tra | |||||||||
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Title | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | |||||||||
![]() | TRNAASP | |||||||||
![]() | T-RNA / SINGLE STRAND / LOOPS | |||||||||
Function / homology | RNA / RNA (> 10)![]() | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Westhof, E. / Dumas, P. / Moras, D. | |||||||||
![]() | ![]() Title: Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. Authors: Westhof, E. / Dumas, P. / Moras, D. #1: ![]() Title: Hydration of Transfer RNA Molecules. A Crystallographic Study Authors: Westhof, E. / Dumas, P. / Moras, D. #2: ![]() Title: Three-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination Authors: Comarmond, M.B. / Giege, R. / Thierry, J.C. / Moras, D. / Fischer, J. #3: ![]() Title: Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP, a Model for T-RNA-M-RNA Recognition Authors: Moras, D. / Dock, A.-C. / Dumas, P. / Westhof, E. / Romby, P. / Ebel, J.-P. / Giege, R. #4: ![]() Title: Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA Authors: Westhof, E. / Dumas, P. / Moras, D. #5: ![]() Title: Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates Authors: Dumas, P. / Ebel, J.P. / Giege, R. / Moras, D. / Thierry, J.C. / Westhof, E. #6: ![]() Title: Loop Stereochemistry and Dynamics in Transfer RNA Authors: Westhof, E. / Dumas, P. / Moras, D. #7: ![]() Title: Crystal Structure of Yeast T-RNA-ASP Authors: Moras, D. / Comarmond, M.B. / Fischer, J. / Weiss, R. / Thierry, J.C. / Ebel, J.P. / Giege, R. #8: ![]() Title: Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA Authors: Giege, R. / Moras, D. / Thierry, J.C. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 55 KB | Display | ![]() |
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PDB format | ![]() | 38.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 397.1 KB | Display | ![]() |
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Full document | ![]() | 426.3 KB | Display | |
Data in XML | ![]() | 10.5 KB | Display | |
Data in CIF | ![]() | 13.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: RNA chain | Mass: 24181.369 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-MG / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.17 Å3/Da / Density % sol: 61.18 % |
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Crystal grow | *PLUS Method: unknown |
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Processing
Software | Name: NUCLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 3→10 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 3→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 3 Å / Lowest resolution: 10 Å / Num. reflection all: 6625 / σ(F): 2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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