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Yorodumi- PDB-2q3e: Structure of human UDP-glucose dehydrogenase complexed with NADH ... -
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Basic information
| Entry | Database: PDB / ID: 2q3e | ||||||
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| Title | Structure of human UDP-glucose dehydrogenase complexed with NADH and UDP-glucose | ||||||
Components | UDP-glucose 6-dehydrogenase | ||||||
Keywords | OXIDOREDUCTASE / UDP-GLUCOSE 6-DEHYDROGENASE / hexamer / Structural Genomics / Structural Genomics Consortium / SGC | ||||||
| Function / homology | Function and homology informationFormation of the active cofactor, UDP-glucuronate / UDP-glucose 6-dehydrogenase activity / UDP-glucose 6-dehydrogenase / UDP-glucuronate biosynthetic process / glycosaminoglycan biosynthetic process / chondroitin sulfate proteoglycan biosynthetic process / heparan sulfate proteoglycan biosynthetic process / gastrulation with mouth forming second / protein hexamerization / neuron development ...Formation of the active cofactor, UDP-glucuronate / UDP-glucose 6-dehydrogenase activity / UDP-glucose 6-dehydrogenase / UDP-glucuronate biosynthetic process / glycosaminoglycan biosynthetic process / chondroitin sulfate proteoglycan biosynthetic process / heparan sulfate proteoglycan biosynthetic process / gastrulation with mouth forming second / protein hexamerization / neuron development / NAD binding / extracellular exosome / nucleoplasm / identical protein binding / nucleus / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2 Å | ||||||
Authors | Kavanagh, K.L. / Guo, K. / Bunkoczi, G. / Savitsky, P. / Pilka, E. / Bhatia, C. / Smee, C. / Berridge, G. / von Delft, F. / Wiegelt, J. ...Kavanagh, K.L. / Guo, K. / Bunkoczi, G. / Savitsky, P. / Pilka, E. / Bhatia, C. / Smee, C. / Berridge, G. / von Delft, F. / Wiegelt, J. / Arrowsmith, C. / Sundstrom, M. / Edwards, A. / Oppermann, U. / Structural Genomics Consortium (SGC) | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2011Title: Structure and mechanism of human UDP-glucose 6-dehydrogenase. Authors: Egger, S. / Chaikuad, A. / Kavanagh, K.L. / Oppermann, U. / Nidetzky, B. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 2q3e.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb2q3e.ent.gz | 922 KB | Display | PDB format |
| PDBx/mmJSON format | 2q3e.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 2q3e_validation.pdf.gz | 7.5 MB | Display | wwPDB validaton report |
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| Full document | 2q3e_full_validation.pdf.gz | 7.5 MB | Display | |
| Data in XML | 2q3e_validation.xml.gz | 249.5 KB | Display | |
| Data in CIF | 2q3e_validation.cif.gz | 327.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/q3/2q3e ftp://data.pdbj.org/pub/pdb/validation_reports/q3/2q3e | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 2qg4C ![]() 3itkC ![]() 2o3jS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
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