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Open data
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Basic information
Entry | Database: PDB / ID: 2pru | ||||||
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Title | NMR Structure of Human apoS100B at 10C | ||||||
![]() | Protein S100-B | ||||||
![]() | METAL BINDING PROTEIN / S100 / Calcium Binding Protein / EF-hand / all alpha helical protein | ||||||
Function / homology | ![]() adaptive thermogenesis / sympathetic neuron projection extension / RAGE receptor binding / ion binding / S100 protein binding / regulation of neuronal synaptic plasticity / TRAF6 mediated NF-kB activation / Advanced glycosylation endproduct receptor signaling / Nuclear signaling by ERBB4 / ruffle ...adaptive thermogenesis / sympathetic neuron projection extension / RAGE receptor binding / ion binding / S100 protein binding / regulation of neuronal synaptic plasticity / TRAF6 mediated NF-kB activation / Advanced glycosylation endproduct receptor signaling / Nuclear signaling by ERBB4 / ruffle / positive regulation of neuron differentiation / axonogenesis / sarcoplasmic reticulum / central nervous system development / TAK1-dependent IKK and NF-kappa-B activation / tau protein binding / memory / calcium-dependent protein binding / positive regulation of canonical NF-kappaB signal transduction / learning or memory / cell adhesion / intracellular membrane-bounded organelle / neuronal cell body / calcium ion binding / positive regulation of cell population proliferation / perinuclear region of cytoplasm / protein homodimerization activity / extracellular space / zinc ion binding / extracellular region / nucleoplasm / identical protein binding / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / CNS - non-crystallograqphic symmetry for the homodimer, distance geometry, simulated annealing, molecular dynamics. Final Refinement in the presence of explicit solvent. | ||||||
![]() | Malik, S. / Shaw, G.S. / Revington, M. | ||||||
![]() | ![]() Title: Analysis of the structure of human apo-S100B at low temperature indicates a unimodal conformational distribution is adopted by calcium-free S100 proteins. Authors: Malik, S. / Revington, M. / Smith, S.P. / Shaw, G.S. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 1.1 MB | Display | ![]() |
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PDB format | ![]() | 939.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 355 KB | Display | ![]() |
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Full document | ![]() | 603.1 KB | Display | |
Data in XML | ![]() | 60.9 KB | Display | |
Data in CIF | ![]() | 92.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 10595.841 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy. |
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Sample preparation
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Sample conditions | Ionic strength: 50 mM / pH: 7.2 / Pressure: ambient / Temperature: 283 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: CNS - non-crystallograqphic symmetry for the homodimer, distance geometry, simulated annealing, molecular dynamics. Final Refinement in the presence of explicit solvent. Software ordinal: 1 / Details: 2504 NOEs, 124 Hbond distance restraints | ||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |