+Open data
-Basic information
Entry | Database: PDB / ID: 2pro | ||||||
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Title | PRO REGION OF ALPHA-LYTIC PROTEASE | ||||||
Components | ALPHA-LYTIC PROTEASE | ||||||
Keywords | PRO REGION / FOLDASE / PROTEIN FOLDING / SERINE PROTEASE | ||||||
Function / homology | Function and homology information alpha-lytic endopeptidase / serine-type endopeptidase activity / proteolysis / extracellular region Similarity search - Function | ||||||
Biological species | Lysobacter enzymogenes (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 3 Å | ||||||
Authors | Sauter, N.K. / Mau, T. / Rader, S.D. / Agard, D.A. | ||||||
Citation | Journal: Nat.Struct.Biol. / Year: 1998 Title: Structure of alpha-lytic protease complexed with its pro region. Authors: Sauter, N.K. / Mau, T. / Rader, S.D. / Agard, D.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2pro.cif.gz | 87.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2pro.ent.gz | 68 KB | Display | PDB format |
PDBx/mmJSON format | 2pro.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2pro_validation.pdf.gz | 443.1 KB | Display | wwPDB validaton report |
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Full document | 2pro_full_validation.pdf.gz | 488.8 KB | Display | |
Data in XML | 2pro_validation.xml.gz | 21.8 KB | Display | |
Data in CIF | 2pro_validation.cif.gz | 29.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pr/2pro ftp://data.pdbj.org/pub/pdb/validation_reports/pr/2pro | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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4 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper:
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-Components
#1: Protein | Mass: 17835.881 Da / Num. of mol.: 3 / Fragment: PRO REGION Source method: isolated from a genetically manipulated source Source: (gene. exp.) Lysobacter enzymogenes (bacteria) / Description: T7 EXPRESSION SYSTEM / Cell line: B834 / Plasmid: PT7PRO / Cellular location (production host): INCLUSION BODIES / Production host: Escherichia coli (E. coli) / Strain (production host): B834 (DE3) PLYSS / References: UniProt: P00778 Sequence details | THE FIVE METHIONINE RESIDUES IN THIS ENTRY ARE ACTUALLY A MIXTURE OF ABOUT 80% SELENO-L-METHIONINE ...THE FIVE METHIONINE | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.94 Å3/Da / Density % sol: 58 % / Description: DATA WERE COLLECTED WITH INVERSE BEAM GEOMETRY | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 8 / Details: pH 8.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 7 ℃ / Method: vapor diffusion / Details: used to seeding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: SYNCHROTRON / Site: NSLS / Beamline: X4A / Wavelength: 0.9690, 0.97915, 0.97938 | ||||||||||||
Detector | Type: FUJI / Detector: IMAGE PLATE / Date: Mar 23, 1996 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 3→16 Å / Num. obs: 22778 / % possible obs: 93.5 % / Redundancy: 1.6 % / Rmerge(I) obs: 0.052 / Net I/σ(I): 13 | ||||||||||||
Reflection shell | Resolution: 3→3.14 Å / Redundancy: 1.6 % / Rmerge(I) obs: 0.222 / Mean I/σ(I) obs: 3.4 / % possible all: 94.9 | ||||||||||||
Reflection | *PLUS Num. measured all: 39904 | ||||||||||||
Reflection shell | *PLUS % possible obs: 94.9 % |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 3→6 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 3→6 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3→3.12 Å / Rfactor Rfree: 0.489 / Rfactor Rwork: 0.314 / Total num. of bins used: 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Xplor file |
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