+Open data
-Basic information
Entry | Database: PDB / ID: 2pik | |||||||||||||||||||||
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Title | CALICHEAMICIN GAMMA1I-DNA COMPLEX, NMR, 6 STRUCTURES | |||||||||||||||||||||
Components | DNA(5'-D(C*Keywords | DNA / DEOXYRIBONUCLEIC ACID / CALICHEAMICIN GAMMA1I - DNA COMPLEX / ENEDIYNE ALIGNMENT IN MINOR GROOVE / SACCHARIDE DNA MINOR GROOVE INTERACTIONS / INTERMOLECULAR DRUG IODINE-GUANINE AMINO PROTON INTERACTIONS / SPECIFICITY AND CLEAVAGE PROCESS | Function / homology | 2,6-dideoxy-4-thio-beta-D-allopyranose / Chem-HIB / 3-O-methyl-alpha-L-rhamnopyranose / Chem-MTC / DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / simulated annealing | Authors | Kumar, R.A. / Ikemoto, N. / Patel, D.J. | Citation | Journal: J.Mol.Biol. / Year: 1997 Title: Solution structure of the calicheamicin gamma 1I-DNA complex. Authors: Kumar, R.A. / Ikemoto, N. / Patel, D.J. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1995 Title: Calicheamicin-DNA Complexes: Warhead Alignment and Saccharide Recognition of the Minor Groove Authors: Ikemoto, N. / Kumar, R.A. / Ling, T.T. / Ellestad, G.A. / Danishefsky, S.J. / Patel, D.J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2pik.cif.gz | 99.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2pik.ent.gz | 76 KB | Display | PDB format |
PDBx/mmJSON format | 2pik.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2pik_validation.pdf.gz | 531.8 KB | Display | wwPDB validaton report |
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Full document | 2pik_full_validation.pdf.gz | 591.2 KB | Display | |
Data in XML | 2pik_validation.xml.gz | 10.6 KB | Display | |
Data in CIF | 2pik_validation.cif.gz | 13.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pi/2pik ftp://data.pdbj.org/pub/pdb/validation_reports/pi/2pik | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
-DNA chain , 1 types, 1 molecules A
#1: DNA chain | Mass: 7038.531 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Sugars , 3 types, 3 molecules
#2: Polysaccharide | 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D- ...2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose Type: oligosaccharide / Mass: 320.382 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#3: Sugar | ChemComp-DSR / |
#5: Sugar | ChemComp-MRP / |
-Non-polymers , 2 types, 2 molecules
#4: Chemical | ChemComp-HIB / |
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#6: Chemical | ChemComp-MTC / [ |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
Software |
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NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||
NMR ensemble | Conformers calculated total number: 6 / Conformers submitted total number: 6 |