+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 2oqs | ||||||
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タイトル | Structure of the hDLG/SAP97 PDZ2 in complex with HPV-18 papillomavirus E6 peptide | ||||||
要素 |
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キーワード | PEPTIDE BINDING PROTEIN / HPV E6 / hDLG PDZ domain / protein-peptide complex / PEPTIDE-BINDING PROTEIN | ||||||
機能・相同性 | 機能・相同性情報 regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization / regulation of protein localization to synapse / regulation of potassium ion import / L27 domain binding / regulation of potassium ion export across plasma membrane / MPP7-DLG1-LIN7 complex / membrane raft organization / hard palate development / establishment of centrosome localization / negative regulation of p38MAPK cascade ...regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization / regulation of protein localization to synapse / regulation of potassium ion import / L27 domain binding / regulation of potassium ion export across plasma membrane / MPP7-DLG1-LIN7 complex / membrane raft organization / hard palate development / establishment of centrosome localization / negative regulation of p38MAPK cascade / guanylate kinase activity / cortical microtubule organization / regulation of sodium ion transmembrane transport / NrCAM interactions / embryonic skeletal system morphogenesis / astral microtubule organization / structural constituent of postsynaptic density / lateral loop / reproductive structure development / myelin sheath abaxonal region / immunological synapse formation / 蠕動 / cell projection membrane / Synaptic adhesion-like molecules / smooth muscle tissue development / bicellular tight junction assembly / positive regulation of potassium ion transport / ランヴィエの絞輪 / regulation of ventricular cardiac muscle cell action potential / protein-containing complex localization / Trafficking of AMPA receptors / Assembly and cell surface presentation of NMDA receptors / establishment or maintenance of epithelial cell apical/basal polarity / amyloid precursor protein metabolic process / neurotransmitter receptor localization to postsynaptic specialization membrane / lens development in camera-type eye / endothelial cell proliferation / Activation of Ca-permeable Kainate Receptor / regulation of myelination / cortical actin cytoskeleton organization / branching involved in ureteric bud morphogenesis / establishment or maintenance of cell polarity / negative regulation of G1/S transition of mitotic cell cycle / positive regulation of actin filament polymerization / Negative regulation of NMDA receptor-mediated neuronal transmission / Unblocking of NMDA receptors, glutamate binding and activation / receptor clustering / phosphoprotein phosphatase activity / 長期増強 / 免疫シナプス / 介在板 / 基底膜 / lateral plasma membrane / potassium channel regulator activity / bicellular tight junction / negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / phosphatase binding / T cell proliferation / negative regulation of T cell proliferation / cytoskeletal protein binding / actin filament polymerization / Ras activation upon Ca2+ influx through NMDA receptor / phosphatidylinositol 3-kinase/protein kinase B signal transduction / synaptic membrane / regulation of membrane potential / protein localization to plasma membrane / actin filament organization / positive regulation of protein localization to plasma membrane / postsynaptic density membrane / 接着結合 / neuromuscular junction / negative regulation of ERK1 and ERK2 cascade / 筋鞘 / cytoplasmic side of plasma membrane / kinase binding / 細胞接着 / negative regulation of epithelial cell proliferation / cell-cell junction / 細胞結合 / regulation of cell shape / RAF/MAP kinase cascade / chemical synaptic transmission / basolateral plasma membrane / 微小管 / transmembrane transporter binding / molecular adaptor activity / neuron projection / cadherin binding / 脂質ラフト / apical plasma membrane / glutamatergic synapse / positive regulation of cell population proliferation / endoplasmic reticulum membrane / perinuclear region of cytoplasm / ゴルジ体 / negative regulation of transcription by RNA polymerase II / 小胞体 / extracellular exosome / 細胞核 / 細胞膜 類似検索 - 分子機能 | ||||||
生物種 | Homo sapiens (ヒト) | ||||||
手法 | 溶液NMR / simulated annealing | ||||||
データ登録者 | Liu, Y. / Baleja, J.D. / Henry, G.D. / Hegde, R.S. | ||||||
引用 | ジャーナル: Biochemistry / 年: 2007 タイトル: Solution structure of the hDlg/SAP97 PDZ2 domain and its mechanism of interaction with HPV-18 papillomavirus E6 protein. 著者: Liu, Y. / Henry, G.D. / Hegde, R.S. / Baleja, J.D. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 2oqs.cif.gz | 963.3 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb2oqs.ent.gz | 825.1 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 2oqs.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/oq/2oqs ftp://data.pdbj.org/pub/pdb/validation_reports/oq/2oqs | HTTPS FTP |
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-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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NMR アンサンブル |
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-要素
#1: タンパク質 | 分子量: 10400.886 Da / 分子数: 1 / 断片: second PDZ domain, residues 318-406 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 遺伝子: DLG1 / プラスミド: pET30a(+) / 生物種 (発現宿主): Escherichia coli / 発現宿主: Escherichia coli BL21(DE3) (大腸菌) / 株 (発現宿主): BL21(DE3) / 参照: UniProt: Q12959 |
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#2: タンパク質・ペプチド | 分子量: 789.880 Da / 分子数: 1 / 由来タイプ: 合成 詳細: This sequence occurs naturally in Homo sapiens (human) |
-実験情報
-実験
実験 | 手法: 溶液NMR | ||||||||||||||||||||||||||||||||||||||||
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NMR実験 |
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NMR実験の詳細 | Text: The structure was determined using triple-resonance NMR spectroscopy. |
-試料調製
詳細 |
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試料状態 |
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-NMR測定
放射 | プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M |
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放射波長 | 相対比: 1 |
NMRスペクトロメーター | タイプ: Bruker AVANCE DRX / 製造業者: Bruker / モデル: AVANCE DRX / 磁場強度: 600 MHz |
-解析
NMR software |
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精密化 | 手法: simulated annealing / ソフトェア番号: 1 詳細: the structures are based on a total of 1426 restraints, 1126 are NOE-derived distance constraints, 163 dihedral angle restraints, 50 distance restraints from hydrogen bonds and 87 NH residual dipolar couplings. | ||||||||||||||||||||||||
代表構造 | 選択基準: lowest energy | ||||||||||||||||||||||||
NMRアンサンブル | コンフォーマー選択の基準: all calculated structures submitted 計算したコンフォーマーの数: 30 / 登録したコンフォーマーの数: 30 |