- PDB-2mjm: The solution NMR structure of the NLRC5 caspase recruitment domai... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 2mjm
Title
The solution NMR structure of the NLRC5 caspase recruitment domain (CARD)
Components
Protein NLRC5
Keywords
SIGNALING PROTEIN / PROTEIN BINDING / NLRC5 / CARD / RIG-I / DEATH FOLD / PROTEIN-PROTEIN INTERACTION / INFLAMMATION / INNATE IMMUNE SYSTEM
Function / homology
Function and homology information
positive regulation of MHC class I biosynthetic process / regulation of kinase activity / positive regulation of type II interferon-mediated signaling pathway / positive regulation of type I interferon-mediated signaling pathway / negative regulation of type I interferon-mediated signaling pathway / negative regulation of NF-kappaB transcription factor activity / response to bacterium / defense response to virus / intracellular signal transduction / RNA polymerase II cis-regulatory region sequence-specific DNA binding ...positive regulation of MHC class I biosynthetic process / regulation of kinase activity / positive regulation of type II interferon-mediated signaling pathway / positive regulation of type I interferon-mediated signaling pathway / negative regulation of type I interferon-mediated signaling pathway / negative regulation of NF-kappaB transcription factor activity / response to bacterium / defense response to virus / intracellular signal transduction / RNA polymerase II cis-regulatory region sequence-specific DNA binding / innate immune response / centrosome / positive regulation of transcription by RNA polymerase II / ATP binding / nucleus / cytoplasm / cytosol Similarity search - Function
NOE constraints total: 1278 / NOE intraresidue total count: 429 / NOE long range total count: 198 / NOE medium range total count: 304 / NOE sequential total count: 347
NMR representative
Selection criteria: lowest energy
NMR ensemble
Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20
+
About Yorodumi
-
News
-
Feb 9, 2022. New format data for meta-information of EMDB entries
New format data for meta-information of EMDB entries
Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi