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- PDB-2n96: An unexpected mode of small molecule DNA binding provides the str... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2n96 | ||||||||||||||||||||||||
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Title | An unexpected mode of small molecule DNA binding provides the structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A | ||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / diazofluorene / intercalator | Function / homology | Chem-4JF / DNA | ![]() Biological species | synthetic construct (others) | Method | SOLUTION NMR / molecular dynamics | Model details | minimized average structure, model1 | Model type details | minimized average | ![]() Woo, C.M. / Li, Z. / Paulson, E. / Herzon, S.B. | ![]() ![]() Title: Structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A. Authors: Woo, C.M. / Li, Z. / Paulson, E.K. / Herzon, S.B. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 98.6 KB | Display | ![]() |
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PDB format | ![]() | 71.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 492.2 KB | Display | ![]() |
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Full document | ![]() | 606.1 KB | Display | |
Data in XML | ![]() | 21.2 KB | Display | |
Data in CIF | ![]() | 25.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 2426.617 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | ChemComp-4JF / ( | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 24 / pH: 7.5 / Pressure: ambient / Temperature: 297 K |
-NMR measurement
NMR spectrometer | Type: Agilent Direct Drive / Manufacturer: Agilent / Model: Direct Drive / Field strength: 800 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 2 | ||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 1000 / Conformers submitted total number: 6 |