+Open data
-Basic information
Entry | Database: PDB / ID: 2mtp | ||||||
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Title | The structure of Filamin repeat 21 bound to integrin | ||||||
Components |
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Keywords | PROTEIN BINDING/Cell Adhesion / integrin / filamin / PROTEIN BINDING-Cell Adhesion complex | ||||||
Function / homology | Function and homology information regulation of membrane repolarization during atrial cardiac muscle cell action potential / regulation of membrane repolarization during cardiac muscle cell action potential / establishment of Sertoli cell barrier / Myb complex / glycoprotein Ib-IX-V complex / adenylate cyclase-inhibiting dopamine receptor signaling pathway / formation of radial glial scaffolds / positive regulation of integrin-mediated signaling pathway / cytoplasmic sequestering of protein / tubulin deacetylation ...regulation of membrane repolarization during atrial cardiac muscle cell action potential / regulation of membrane repolarization during cardiac muscle cell action potential / establishment of Sertoli cell barrier / Myb complex / glycoprotein Ib-IX-V complex / adenylate cyclase-inhibiting dopamine receptor signaling pathway / formation of radial glial scaffolds / positive regulation of integrin-mediated signaling pathway / cytoplasmic sequestering of protein / tubulin deacetylation / tube development / regulation of serotonin uptake / actin crosslink formation / positive regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway / alpha9-beta1 integrin-ADAM8 complex / regulation of trophoblast cell migration / blood coagulation, intrinsic pathway / regulation of postsynaptic neurotransmitter receptor diffusion trapping / protein localization to bicellular tight junction / alphav-beta3 integrin-vitronectin complex / OAS antiviral response / regulation of extracellular matrix organization / positive regulation of actin filament bundle assembly / platelet alpha granule membrane / positive regulation of glomerular mesangial cell proliferation / integrin alphav-beta3 complex / negative regulation of lipoprotein metabolic process / positive regulation of neuron migration / positive regulation of potassium ion transmembrane transport / Cell-extracellular matrix interactions / alphav-beta3 integrin-PKCalpha complex / fibrinogen binding / maintenance of postsynaptic specialization structure / alphav-beta3 integrin-HMGB1 complex / early endosome to late endosome transport / blood coagulation, fibrin clot formation / negative regulation of lipid transport / apical dendrite / vascular endothelial growth factor receptor 2 binding / Fc-gamma receptor I complex binding / glycinergic synapse / negative regulation of low-density lipoprotein receptor activity / angiogenesis involved in wound healing / cell-cell junction organization / Elastic fibre formation / regulation of release of sequestered calcium ion into cytosol / positive regulation of neural precursor cell proliferation / mesodermal cell differentiation / cell-substrate junction assembly / alphav-beta3 integrin-IGF-1-IGF1R complex / platelet-derived growth factor receptor binding / positive regulation of platelet activation / filopodium membrane / extracellular matrix binding / regulation of postsynaptic neurotransmitter receptor internalization / protein localization to cell surface / positive regulation of fibroblast migration / positive regulation of vascular endothelial growth factor receptor signaling pathway / apolipoprotein A-I-mediated signaling pathway / regulation of bone resorption / apoptotic cell clearance / positive regulation of cell adhesion mediated by integrin / wound healing, spreading of epidermal cells / heterotypic cell-cell adhesion / integrin complex / Molecules associated with elastic fibres / positive regulation of leukocyte migration / wound healing, spreading of cells / negative regulation of transcription by RNA polymerase I / positive regulation of cell-matrix adhesion / cellular response to insulin-like growth factor stimulus / smooth muscle cell migration / microvillus membrane / megakaryocyte development / negative chemotaxis / cell adhesion mediated by integrin / Syndecan interactions / GP1b-IX-V activation signalling / cortical cytoskeleton / p130Cas linkage to MAPK signaling for integrins / activation of protein kinase activity / cellular response to platelet-derived growth factor stimulus / cell-substrate adhesion / protein disulfide isomerase activity / positive regulation of smooth muscle cell migration / positive regulation of axon regeneration / positive regulation of osteoblast proliferation / receptor clustering / SMAD binding / TGF-beta receptor signaling activates SMADs / RHO GTPases activate PAKs / actin filament bundle / brush border / PECAM1 interactions / lamellipodium membrane / GRB2:SOS provides linkage to MAPK signaling for Integrins / semaphorin-plexin signaling pathway / negative regulation of macrophage derived foam cell differentiation / platelet-derived growth factor receptor signaling pathway / negative regulation of lipid storage Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model1 | ||||||
Authors | Liu, J. / Qin, J. | ||||||
Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2015 Title: Structural mechanism of integrin inactivation by filamin. Authors: Liu, J. / Das, M. / Yang, J. / Ithychanda, S.S. / Yakubenko, V.P. / Plow, E.F. / Qin, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mtp.cif.gz | 1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2mtp.ent.gz | 899.2 KB | Display | PDB format |
PDBx/mmJSON format | 2mtp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2mtp_validation.pdf.gz | 655.7 KB | Display | wwPDB validaton report |
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Full document | 2mtp_full_validation.pdf.gz | 1.7 MB | Display | |
Data in XML | 2mtp_validation.xml.gz | 152.2 KB | Display | |
Data in CIF | 2mtp_validation.cif.gz | 179.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mt/2mtp ftp://data.pdbj.org/pub/pdb/validation_reports/mt/2mtp | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 9762.721 Da / Num. of mol.: 1 / Fragment: UNP residues 2236-2330 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: FLNA, FLN, FLN1 / Production host: Escherichia coli (E. coli) / References: UniProt: P21333 |
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#2: Protein/peptide | Mass: 2581.789 Da / Num. of mol.: 1 / Fragment: UNP residues 1019-1039 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: ITGA2B, GP2B, ITGAB / Production host: Escherichia coli (E. coli) / References: UniProt: P08514 |
#3: Protein/peptide | Mass: 5618.318 Da / Num. of mol.: 1 / Fragment: UNP residues 742-788 / Mutation: L717K, L718K Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: ITGB3, GP3A / Production host: Escherichia coli (E. coli) / References: UniProt: P05106 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1 mM [U-100% 13C; U-100% 15N; U-80% 2H] protein, 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 1 mM / Component: entity_1-1 / Isotopic labeling: [U-100% 13C; U-100% 15N; U-80% 2H] |
Sample conditions | Ionic strength: 25 / pH: 6.4 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | |||||||||
NMR representative | Selection criteria: lowest energy | |||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |