THIS PROTEIN SEQUENCE IS ISOFORM 3 OF CPEB4_HUMAN.
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実験情報
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実験
実験
手法: 溶液NMR
NMR実験
Conditions-ID
Experiment-ID
Solution-ID
タイプ
1
1
5
2D 1H-15N HSQC
1
2
2
2D 1H-13C HSQC
1
3
2
2D 1H-13C HSQC aliphatic
1
4
2
2D 1H-13C HSQC aromatic
1
5
5
2D 1H-1H TOCSY
1
6
4
2D 1H-1H NOESY
1
7
3
3DtrHNCA
1
8
3
3DtrHN(CO)CA
1
9
3
3DtrCBCA(CO)NH
1
10
3
3DtrHNCACB
1
11
3
3DtrHNCO
1
12
3
3DtrHCACO
1
13
1
3D (H)CCH-TOCSY
1
14
5
3D 1H-15N NOESY
1
15
3
3D 1H-13C NOESY aliphatic
1
16
3
3D 1H-13C NOESY aromatic
1
17
3
3D (H)CCH-TOCSY
1
18
5
2D 1H-15N TROSY
1
19
1
2D 13C F1-filtered F2-filtered NOESY
1
20
1
2D 1H-1H F1-13C-filtered F2-13C-edited NOESY
1
21
1
3D 13C F1-edited, F3-filtered NOESYHSQC
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試料調製
詳細
Solution-ID
内容
溶媒系
1
50 mM sodium phosphate-1, 100 mM sodium chloride-2, 1 mM DTT-3, 0.6 mM [U-100% 13C; U-100% 15N] CPEB4RRM12-4, 0.6 mM 5'-CUUUA-3'-5, 90% H2O/10% D2O
90% H2O/10% D2O
2
0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB4RRM12-6, 0.4-06 mM RNA (5'-CUUUA)-3')-7, 100 mM sodium chloride-8, 1 mM DTT-9, 50 mM sodium phosphate-10, 100% D2O
100% D2O
3
0.4-0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] CPEB4RRM12-11, 0.4-0.6 mM 5'-CUUUA-3'-12, 100 mM sodium chloride-13, 1 mM DTT-14, 50 mM sodium phosphate-15, 90% H2O/10% D2O
90% H2O/10% D2O
4
0.4-0.6 mM [U-100% 15N] CPEB4RRM12-16, 0.4-0.6 mM 5'-CUUUA-3'-17, 100 mM sodium chloride-18, 1 mM DTT-19, 50 mM potassium phosphate-20, 100% D2O
100% D2O
5
0.4-0.6 mM [U-100% 15N] CPEB4RRM12-21, 0.4-0.6 mM 5'-CUUUA-3'-22, 100 mM sodium chloride-23, 1 mM DTT-24, 50 mM potassium phosphate-25, 90% H2O/10% D2O
90% H2O/10% D2O
試料
濃度 (mg/ml)
単位
構成要素
Isotopic labeling
Conc. range (mg/ml)
Solution-ID
50mM
sodium phosphate-1
1
100mM
sodium chloride-2
1
1mM
DTT-3
1
0.6mM
CPEB4RRM12-4
[U-100% 13C; U-100% 15N]
1
0.6mM
5'-CUUUA-3'-5
1
mM
CPEB4RRM12-6
[U-100% 13C; U-100% 15N]
0.4-0.6
2
mM
RNA (5'-CUUUA)-3')-7
0.4-06
2
100mM
sodium chloride-8
2
1mM
DTT-9
2
50mM
sodium phosphate-10
2
mM
CPEB4RRM12-11
[U-100% 13C; U-100% 15N; U-80% 2H]
0.4-0.6
3
mM
5'-CUUUA-3'-12
0.4-0.6
3
100mM
sodium chloride-13
3
1mM
DTT-14
3
50mM
sodium phosphate-15
3
mM
CPEB4RRM12-16
[U-100% 15N]
0.4-0.6
4
mM
5'-CUUUA-3'-17
0.4-0.6
4
100mM
sodium chloride-18
4
1mM
DTT-19
4
50mM
potassium phosphate-20
4
mM
CPEB4RRM12-21
[U-100% 15N]
0.4-0.6
5
mM
5'-CUUUA-3'-22
0.4-0.6
5
100mM
sodium chloride-23
5
1mM
DTT-24
5
50mM
potassium phosphate-25
5
試料状態
イオン強度: 0.15 / pH: 7.0 / 圧: ambient / 温度: 303 K
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NMR測定
NMRスペクトロメーター
タイプ
製造業者
モデル
磁場強度 (MHz)
Spectrometer-ID
Bruker Avance
Bruker
AVANCE
900
1
Bruker Avance
Bruker
AVANCE
700
2
Bruker Avance
Bruker
AVANCE
600
3
Bruker Avance
Bruker
AVANCE
500
4
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解析
NMR software
名称: Amber 開発者: Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 分類: 精密化
精密化
手法: simulated annealing / ソフトェア番号: 1
代表構造
選択基準: closest to the average
NMRアンサンブル
コンフォーマー選択の基準: structures with the lowest energy 計算したコンフォーマーの数: 30 / 登録したコンフォーマーの数: 20 / 代表コンフォーマー: 3