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Yorodumi- PDB-2lz2: THE THREE DIMENSIONAL STRUCTURE OF TURKEY EGG WHITE LYSOZYME AT 2... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lz2 | ||||||
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Title | THE THREE DIMENSIONAL STRUCTURE OF TURKEY EGG WHITE LYSOZYME AT 2.2 ANGSTROMS RESOLUTION | ||||||
Components | TURKEY EGG WHITE LYSOZYME | ||||||
Keywords | HYDROLASE (O-GLYCOSYL) | ||||||
Function / homology | Function and homology information glycosaminoglycan binding / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / extracellular space / identical protein binding / cytoplasm Similarity search - Function | ||||||
Biological species | Meleagris gallopavo (turkey) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.2 Å | ||||||
Authors | Parsons, M.R. / Phillips, S.E.V. | ||||||
Citation | Journal: To be Published Title: The Three Dimensional Structure of Turkey Egg White Lysozyme at 2.2 Angstroms Resolution Authors: Parsons, M.R. / Phillips, S.E.V. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lz2.cif.gz | 38.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lz2.ent.gz | 28 KB | Display | PDB format |
PDBx/mmJSON format | 2lz2.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lz/2lz2 ftp://data.pdbj.org/pub/pdb/validation_reports/lz/2lz2 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: SEE REMARK 5. |
-Components
#1: Protein | Mass: 14228.105 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Meleagris gallopavo (turkey) / References: UniProt: P00703, lysozyme |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.17 Å3/Da / Density % sol: 43.33 % |
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-Processing
Software | Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 2.2→10 Å / Rfactor obs: 0.192 Details: PRO 70, GLY 71, AND SER 72 DO NOT MAKE A GOOD FIT TO THE ELECTRON DENSITY AND HAVE HIGH TEMPERATURE FACTORS. THIS REGION IS THOUGHT TO BE FLEXIBLE. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→10 Å
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Refine LS restraints |
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