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Yorodumi- PDB-2k5u: Solution structure of myirstoylated yeast ARF1 protein, GDP-bound -
+Open data
-Basic information
Entry | Database: PDB / ID: 2k5u | ||||||
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Title | Solution structure of myirstoylated yeast ARF1 protein, GDP-bound | ||||||
Components | ADP-ribosylation factor 1ARF1 | ||||||
Keywords | SIGNALING PROTEIN / ARF / ARF1 / myristoyl / myrsitoylated / GDP / ER-Golgi transport / Golgi apparatus / GTP-binding / Lipoprotein / Myristate / Nucleotide-binding / Protein transport / Transport | ||||||
Function / homology | Function and homology information VxPx cargo-targeting to cilium / Intra-Golgi traffic / Synthesis of PIPs at the Golgi membrane / trans-Golgi Network Vesicle Budding / COPI-dependent Golgi-to-ER retrograde traffic / COPI-mediated anterograde transport / Golgi vesicle transport / Golgi to plasma membrane transport / endoplasmic reticulum to Golgi vesicle-mediated transport / vesicle-mediated transport ...VxPx cargo-targeting to cilium / Intra-Golgi traffic / Synthesis of PIPs at the Golgi membrane / trans-Golgi Network Vesicle Budding / COPI-dependent Golgi-to-ER retrograde traffic / COPI-mediated anterograde transport / Golgi vesicle transport / Golgi to plasma membrane transport / endoplasmic reticulum to Golgi vesicle-mediated transport / vesicle-mediated transport / small monomeric GTPase / macroautophagy / intracellular protein transport / GTPase activity / GTP binding / Golgi apparatus / plasma membrane / cytosol Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Prestegard, J. / Liu, Y. | ||||||
Citation | Journal: Structure / Year: 2009 Title: Structure and Membrane Interaction of Myristoylated ARF1 Authors: Liu, Y. / Kahn, R.A. / Prestegard, J.H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2k5u.cif.gz | 918.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2k5u.ent.gz | 793.1 KB | Display | PDB format |
PDBx/mmJSON format | 2k5u.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/k5/2k5u ftp://data.pdbj.org/pub/pdb/validation_reports/k5/2k5u | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 20631.598 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Gene: ARF1 / Production host: Escherichia coli (E. coli) / References: UniProt: P11076 |
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#2: Chemical | ChemComp-GDP / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0.1 / pH: 7 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 16 |