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Yorodumi- PDB-2jym: Solution structure of stem-loop alpha of the hepatitis B virus po... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2jym | ||||||||||||||||||
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Title | Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element | ||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / hepatitis B virus / post-transcriptional regulatory element / stem-loop alpha / NMR solution structure | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / DGSA-distance geometry simulated annealing, force field-based em | Authors | Ohlenschlager, O. / Gorlach, M. / Schwalbe, M. | Citation | Journal: Nucleic Acids Res. / Year: 2008 | Title: Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element Authors: Schwalbe, M. / Ohlenschlager, O. / Marchanka, A. / Ramachandran, R. / Hafner, S. / Heise, T. / Gorlach, M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2jym.cif.gz | 207.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2jym.ent.gz | 173.6 KB | Display | PDB format |
PDBx/mmJSON format | 2jym.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2jym_validation.pdf.gz | 323.8 KB | Display | wwPDB validaton report |
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Full document | 2jym_full_validation.pdf.gz | 399.8 KB | Display | |
Data in XML | 2jym_validation.xml.gz | 5 KB | Display | |
Data in CIF | 2jym_validation.cif.gz | 9.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jy/2jym ftp://data.pdbj.org/pub/pdb/validation_reports/jy/2jym | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 7105.267 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing, force field-based em Software ordinal: 1 / Details: structure calculation, energy minimisation | ||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 15 |