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Open data
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Basic information
Entry | Database: PDB / ID: 7cn6 | |||||||||
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Title | T4 phage spackle protein gp61.3 | |||||||||
![]() | Protein spackle | |||||||||
![]() | VIRAL PROTEIN / Lysozyme inhibitor / Phage Lysis inhibition | |||||||||
Function / homology | Protein spackle / superinfection exclusion / host cell periplasmic space / Protein spackle![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Kanamaru, S. / Leiman, P.G. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure and Function of the T4 Spackle Protein Gp61.3. Authors: Kanamaru, S. / Uchida, K. / Nemoto, M. / Fraser, A. / Arisaka, F. / Leiman, P.G. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 138.3 KB | Display | ![]() |
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PDB format | ![]() | 95.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 426.5 KB | Display | ![]() |
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Full document | ![]() | 427 KB | Display | |
Data in XML | ![]() | 14.8 KB | Display | |
Data in CIF | ![]() | 22 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 8876.365 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Details: SF file contains Friedel pairs. / Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.01 Å3/Da / Density % sol: 38.86 % |
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Crystal grow | Temperature: 293.15 K / Method: vapor diffusion, hanging drop / pH: 9.4 / Details: PEG4000, glycine, calcium chloride |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Sep 18, 2009 |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9794 Å / Relative weight: 1 |
Reflection | Resolution: 1.6→39.8 Å / Num. obs: 51366 / % possible obs: 95.2 % / Redundancy: 1.9 % / Biso Wilson estimate: 11.76 Å2 / CC1/2: 0.979 / Rmerge(I) obs: 0.107 / Rpim(I) all: 0.107 / Rrim(I) all: 0.151 / Χ2: 0.83 / Net I/σ(I): 4 |
Reflection shell | Resolution: 1.6→1.63 Å / Rmerge(I) obs: 0.19 / Mean I/σ(I) obs: 2.1 / Num. unique obs: 1001 / CC1/2: 0.895 / Rpim(I) all: 0.19 / Rrim(I) all: 0.269 / Χ2: 0.47 / % possible all: 75.4 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 17.96 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.6→19.9 Å
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Refine LS restraints |
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LS refinement shell |
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