[English] 日本語
Yorodumi- PDB-2jjt: Structure of human CD47 in complex with human signal regulatory p... -
+
Open data
-
Basic information
| Entry | Database: PDB / ID: 2jjt | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Title | Structure of human CD47 in complex with human signal regulatory protein (SIRP) alpha | |||||||||
Components |
| |||||||||
Keywords | CELL ADHESION / SIGNAL REGULATORY PROTEIN ALPHA / IMMUNOGLOBULIN SUPERFAMILY / TRANSMEMBRANE / PHOSPHOPROTEIN / PAIRED RECEPTOR / POLYMORPHISM / GLYCOPROTEIN / PYRROLIDONE CARBOXYLIC ACID / ALTERNATIVE SPLICING / IMMUNOGLOBULIN DOMAIN / SIRP / CD47 / SIRPA / MEMBRANE / SH3-BINDING | |||||||||
| Function / homology | Function and homology informationcellular response to interleukin-12 / monocyte extravasation / regulation of Fc receptor mediated stimulatory signaling pathway / negative regulation of macrophage inflammatory protein 1 alpha production / protein binding involved in heterotypic cell-cell adhesion / negative regulation of chemokine (C-C motif) ligand 5 production / positive regulation of monocyte extravasation / regulation of interleukin-1 beta production / GTPase regulator activity / regulation of interleukin-10 production ...cellular response to interleukin-12 / monocyte extravasation / regulation of Fc receptor mediated stimulatory signaling pathway / negative regulation of macrophage inflammatory protein 1 alpha production / protein binding involved in heterotypic cell-cell adhesion / negative regulation of chemokine (C-C motif) ligand 5 production / positive regulation of monocyte extravasation / regulation of interleukin-1 beta production / GTPase regulator activity / regulation of interleukin-10 production / positive regulation of cell-cell adhesion / regulation of type II interferon production / cell-cell adhesion mediator activity / ATP export / negative regulation of lipopolysaccharide-mediated signaling pathway / fibrinogen binding / regulation of interleukin-12 production / negative regulation of nitric oxide biosynthetic process / protein antigen binding / regulation of tumor necrosis factor production / negative regulation of interferon-beta production / regulation of interleukin-6 production / regulation of nitric oxide biosynthetic process / Signal regulatory protein family interactions / negative regulation of JNK cascade / thrombospondin receptor activity / protein phosphatase inhibitor activity / negative regulation of phagocytosis / negative regulation of interleukin-6 production / tertiary granule membrane / ficolin-1-rich granule membrane / negative regulation of tumor necrosis factor production / cellular response to interleukin-1 / Integrin cell surface interactions / specific granule membrane / positive regulation of stress fiber assembly / negative regulation of cytokine production involved in inflammatory response / positive regulation of phagocytosis / protein tyrosine kinase binding / Cell surface interactions at the vascular wall / integrin-mediated signaling pathway / negative regulation of canonical NF-kappaB signal transduction / negative regulation of ERK1 and ERK2 cascade / SH3 domain binding / cellular response to type II interferon / negative regulation of inflammatory response / positive regulation of reactive oxygen species metabolic process / positive regulation of T cell activation / cellular response to hydrogen peroxide / positive regulation of inflammatory response / cell migration / regulation of gene expression / angiogenesis / protein phosphatase binding / cell adhesion / inflammatory response / apoptotic process / positive regulation of cell population proliferation / Neutrophil degranulation / cell surface / extracellular exosome / membrane / plasma membrane Similarity search - Function | |||||||||
| Biological species | HOMO SAPIENS (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.3 Å | |||||||||
Authors | Hatherley, D. / Graham, S.C. / Turner, J. / Harlos, K. / Stuart, D.I. / Barclay, A.N. | |||||||||
Citation | Journal: Mol. Cell / Year: 2008Title: Paired receptor specificity explained by structures of signal regulatory proteins alone and complexed with CD47. Authors: Hatherley, D. / Graham, S.C. / Turner, J. / Harlos, K. / Stuart, D.I. / Barclay, A.N. | |||||||||
| History |
| |||||||||
| Remark 650 | HELIX DETERMINATION METHOD: AUTHOR PROVIDED. | |||||||||
| Remark 700 | SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. |
-
Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
|---|
-
Downloads & links
-
Download
| PDBx/mmCIF format | 2jjt.cif.gz | 194.1 KB | Display | PDBx/mmCIF format |
|---|---|---|---|---|
| PDB format | pdb2jjt.ent.gz | 155.8 KB | Display | PDB format |
| PDBx/mmJSON format | 2jjt.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jj/2jjt ftp://data.pdbj.org/pub/pdb/validation_reports/jj/2jjt | HTTPS FTP |
|---|
-Related structure data
| Related structure data | ![]() 2jjsSC ![]() 2jjuC ![]() 2jjvC ![]() 2jjwC ![]() 2vscC S: Starting model for refinement C: citing same article ( |
|---|---|
| Similar structure data |
-
Links
-
Assembly
| Deposited unit | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 2 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Unit cell |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
|
Movie
Controller
Components
About Yorodumi



HOMO SAPIENS (human)
X-RAY DIFFRACTION
Citation















PDBj









