intracellular protein transmembrane transport / protein import / protein targeting / ATP binding / plasma membrane / cytoplasm Similarity search - Function
Pre-protein croslinking domain of SecA / SecA, preprotein cross-linking domain / Helical scaffold and wing domains of SecA / Helical scaffold and wing domains of SecA / Protein translocase subunit SecA / SecA DEAD-like, N-terminal / SecA Wing/Scaffold / SecA, preprotein cross-linking domain / SecA motor DEAD / SecA conserved site ...Pre-protein croslinking domain of SecA / SecA, preprotein cross-linking domain / Helical scaffold and wing domains of SecA / Helical scaffold and wing domains of SecA / Protein translocase subunit SecA / SecA DEAD-like, N-terminal / SecA Wing/Scaffold / SecA, preprotein cross-linking domain / SecA motor DEAD / SecA conserved site / SecA, Wing/Scaffold superfamily / SecA, preprotein cross-linking domain superfamily / SecA preprotein cross-linking domain / SecA Wing and Scaffold domain / SecA DEAD-like domain / SecA family signature. / SecA family profile. / SecA DEAD-like domain / SecA preprotein cross-linking domain / P-loop containing nucleotide triphosphate hydrolases / Alpha-Beta Complex / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
Resolution: 2.8→2.9 Å / Redundancy: 2.4 % / Rmerge(I) obs: 0.409 / Mean I/σ(I) obs: 4.2 / Num. unique all: 10542 / Rsym value: 0.409 / % possible all: 92.3
-
Processing
Software
Name
Version
Classification
CrystalClear
(MSC/RIGAKU)
datacollection
MLPHARE
phasing
CNS
1
refinement
HKL-2000
datareduction
HKL-2000
datascaling
Refinement
Method to determine structure: MIR / Resolution: 2.8→40 Å / Isotropic thermal model: isotropic / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber Details: The perfect merohedral twinning (twinning fraction = 0.5) was detected with twinning operator {+h,-h-k,-l}. The refinement was carried out against twinned data using the twinning option of the CNS program.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2545
6730
-
random
Rwork
0.2213
-
-
-
all
0.2213
117271
-
-
obs
0.2213
114222
97.4 %
-
Displacement parameters
Biso mean: 59.1 Å2
Refine analyze
Free
Obs
Luzzati coordinate error
0.39 Å
0.34 Å
Luzzati d res low
-
5 Å
Luzzati sigma a
0.62 Å
0.54 Å
Refinement step
Cycle: LAST / Resolution: 2.8→40 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
30132
0
0
1370
31502
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
c_bond_d
0.013
X-RAY DIFFRACTION
c_angle_deg
1.86
LS refinement shell
Resolution: 2.8→2.9 Å
Rfactor
Num. reflection
% reflection
Rfree
0.3033
599
-
Rwork
0.2889
-
-
obs
-
10139
92.3 %
+
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