- PDB-2i0x: Hypothetical protein PF1117 from Pyrococcus furiosus -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2i0x
Title
Hypothetical protein PF1117 from Pyrococcus furiosus
Components
Hypothetical protein PF1117
Keywords
STRUCTURAL GENOMICS / UNKNOWN FUNCTION / PF1117 / HYPOTHETICAL PROTEIN / PYROCOCCUS FURIOSUS / PSI / SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS / Protein Structure Initiative / SECSG
Function / homology
Function and homology information
maintenance of CRISPR repeat elements / RNA endonuclease activity / defense response to virus / Hydrolases; Acting on ester bonds / metal ion binding Similarity search - Function
CRISPR-associated endonuclease Cas2 / Virulence-associated protein D / CRISPR associated protein Cas2 / CRISPR associated protein Cas2 / Alpha-Beta Plaits - #240 / Alpha-Beta Plaits / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology
PISA suggests that the biological assembly is a a2 dimer. The second part of the biological assembly can be generated by the following operator: -Y+2,-X+2,-z+0.5 symmetry ID 8_665
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Components
#1: Protein
HypotheticalproteinPF1117
Mass: 9992.677 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Pyrococcus furiosus (archaea) / Gene: ORF 1117 / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: Q8U1T8
Resolution: 2.4→2.49 Å / Redundancy: 5.8 % / Mean I/σ(I) obs: 3.7 / Num. unique all: 239 / Rsym value: 0.295 / % possible all: 58.3
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Processing
Software
Name
Version
Classification
SGXPRO
modelbuilding
CNS
1.1
refinement
SERGUI
datacollection
HKL-2000
datareduction
HKL-2000
datascaling
SGXPRO
phasing
Refinement
Method to determine structure: SAD / Resolution: 2.7→25 Å / Data cutoff high rms absF: 10000 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 2
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