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- PDB-2yes: Crystal Structure of Rv0371C complex with Manganese from Mycobact... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2yes | ||||||
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Title | Crystal Structure of Rv0371C complex with Manganese from Mycobacterium Tuberculosis H37Rv | ||||||
![]() | MOCA-RELATED PROTEIN | ||||||
![]() | UNKNOWN FUNCTION | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Cho, H.J. / kang, B.S. | ||||||
![]() | ![]() Title: Crystal Structure of Rv0371C Complex with Manganese from Mycobacterium Tuberculosis H37Rv Authors: Cho, H.J. / Kang, B.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 155.3 KB | Display | ![]() |
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PDB format | ![]() | 122.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 455.2 KB | Display | ![]() |
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Full document | ![]() | 457.8 KB | Display | |
Data in XML | ![]() | 17.8 KB | Display | |
Data in CIF | ![]() | 24.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2weeS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21158.334 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: SER16-THR21 DISORDERED REGION / Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.18 Å3/Da / Density % sol: 43.57 % / Description: NONE |
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Crystal grow | Details: 18% (V/V) PEG 4000, 0.1 M MES (PH 6.0) BY MICROSEEDING |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: BRUKER PROTEUM 300 / Detector: CCD / Date: Jun 16, 2008 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→50 Å / Num. obs: 30184 / % possible obs: 99.9 % / Observed criterion σ(I): 2 / Redundancy: 7.1 % / Rmerge(I) obs: 0.07 / Net I/σ(I): 31.27 |
Reflection shell | Resolution: 1.9→1.97 Å / Redundancy: 7.2 % / Rmerge(I) obs: 0.45 / Mean I/σ(I) obs: 3.76 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2WEE Resolution: 1.9→50.01 Å / Cor.coef. Fo:Fc: 0.954 / Cor.coef. Fo:Fc free: 0.933 / SU B: 4.607 / SU ML: 0.062 / Cross valid method: THROUGHOUT / ESU R: 0.035 / ESU R Free: 0.031 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES 16-21, 76-81 ARE DISORDERED.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 33.651 Å2
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Refinement step | Cycle: LAST / Resolution: 1.9→50.01 Å
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Refine LS restraints |
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