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- PDB-2we9: Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv -
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Open data
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Basic information
Entry | Database: PDB / ID: 2we9 | ||||||
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Title | Crystal structure of Rv0371c from Mycobacterium tuberculosis H37Rv | ||||||
![]() | MOBA-RELATED PROTEIN | ||||||
![]() | UNKNOWN FUNCTION / MYCOBACTERIUM TUBERCULOSIS H37RV | ||||||
Function / homology | MobA-like NTP transferase / MobA-like NTP transferase domain / Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A / Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A / Nucleotide-diphospho-sugar transferases / Alpha-Beta Complex / metal ion binding / Alpha Beta / MobA-like NTP transferase domain-containing protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Cho, H.J. / Kang, B.S. | ||||||
![]() | ![]() Title: Crystal Structure of Rv0371C from Mycobacterium Tuberculosis H37Rv Authors: Cho, H.J. / Kang, B.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 82 KB | Display | ![]() |
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PDB format | ![]() | 67.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 444.8 KB | Display | ![]() |
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Full document | ![]() | 448.1 KB | Display | |
Data in XML | ![]() | 17 KB | Display | |
Data in CIF | ![]() | 23.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21329.916 Da / Num. of mol.: 2 / Source method: isolated from a natural source Source: (natural) ![]() References: UniProt: O53706 #2: Chemical | ChemComp-GOL / | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.12 Å3/Da / Density % sol: 42 % / Description: NONE |
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Crystal grow | pH: 7.5 / Details: 0.1 M MES PH 6.0 AND 18% PEG 4000 BY MICRO-SEEDING |
-Data collection
Diffraction | Mean temperature: 294 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Dec 12, 2007 / Details: MIRRORS |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97948 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→50 Å / Num. obs: 20560 / % possible obs: 95.4 % / Observed criterion σ(I): 2.1 / Redundancy: 11.9 % / Rmerge(I) obs: 0.07 / Net I/σ(I): 41.96 |
Reflection shell | Resolution: 2.1→2.18 Å / Redundancy: 5.6 % / Rmerge(I) obs: 0.25 / Mean I/σ(I) obs: 5 / % possible all: 73.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 2.1→31.67 Å / Cor.coef. Fo:Fc: 0.943 / Cor.coef. Fo:Fc free: 0.897 / SU B: 15.396 / SU ML: 0.203 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / ESU R: 0.321 / ESU R Free: 0.249 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 19.02 Å2
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Refinement step | Cycle: LAST / Resolution: 2.1→31.67 Å
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Refine LS restraints |
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