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Yorodumi- PDB-2eqh: Solution structure of growth-blocking peptide of the armyworm, Ps... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2eqh | ||||||
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Title | Solution structure of growth-blocking peptide of the armyworm, Pseudaletia separata | ||||||
Components | Growth-blocking peptide, short form | ||||||
Keywords | CYTOKINE / GROWTH-BLOCKING PEPTIDE | ||||||
Function / homology | Paralytic/GBP/PSP peptide / Paralytic/GBP/PSP peptide / hemocyte migration / regulation of synaptic transmission, dopaminergic / positive regulation of cell division / cytokine activity / growth factor activity / extracellular space / Growth-blocking peptide, long form Function and homology information | ||||||
Biological species | Mythimna separata (northern armyworm) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Umetsu, Y. / Aizawa, T. / Kamiya, M. / Kumaki, Y. / Demura, M. / Kawano, K. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2009 Title: C-terminal elongation of growth-blocking peptide enhances its biological activity and micelle binding affinity Authors: Umetsu, Y. / Aizawa, T. / Muto, K. / Yamamoto, H. / Kamiya, M. / Kumaki, Y. / Mizuguchi, M. / Demura, M. / Hayakawa, Y. / Kawano, K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2eqh.cif.gz | 118.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2eqh.ent.gz | 96.8 KB | Display | PDB format |
PDBx/mmJSON format | 2eqh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2eqh_validation.pdf.gz | 341.2 KB | Display | wwPDB validaton report |
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Full document | 2eqh_full_validation.pdf.gz | 398.4 KB | Display | |
Data in XML | 2eqh_validation.xml.gz | 9 KB | Display | |
Data in CIF | 2eqh_validation.cif.gz | 14.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/eq/2eqh ftp://data.pdbj.org/pub/pdb/validation_reports/eq/2eqh | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2496.820 Da / Num. of mol.: 1 / Fragment: Growth-blocking peptide, short form Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mythimna separata (northern armyworm) / Production host: Escherichia coli (E. coli) / References: UniProt: Q27913 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 3mM 1-23GBP(pH4.4); 90% H2O, 10% D2O / Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 0 / pH: 4.4 / Pressure: ambient / Temperature: 283 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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NMR representative | Selection criteria: lowest energy | |||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |