+
Open data
-
Basic information
Entry | Database: PDB / ID: 7jiy | ||||||
---|---|---|---|---|---|---|---|
Title | Structure of truncated zebrafish paragranulin | ||||||
![]() | Granulin 1 | ||||||
![]() | UNKNOWN FUNCTION / disulfide-rich / growth factor | ||||||
Function / homology | regulation of nervous system development / Granulin family / Granulin / Granulin superfamily / Granulin / Granulin / extracellular region / Granulin 1![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
![]() | Takjoo, R. / Daly, N.L. | ||||||
![]() | ![]() Title: Folding of Truncated Granulin Peptides. Authors: Takjoo, R. / Wilson, D. / Bansal, P.S. / Loukas, A. / Smout, M.J. / Daly, N.L. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 142.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 114.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 435.8 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 586.1 KB | Display | |
Data in XML | ![]() | 30 KB | Display | |
Data in CIF | ![]() | 27.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7jiaC C: citing same article ( |
---|---|
Similar structure data | |
Other databases |
|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: Protein/peptide | Mass: 2738.171 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-
Sample preparation
Details | Type: solution / Contents: 0.2 mM ZF-para_3s, 90% H2O/10% D2O / Label: 1 / Solvent system: 90% H2O/10% D2O |
---|---|
Sample | Conc.: 0.2 mM / Component: ZF-para_3s / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 M / Label: 1 / pH: 3 / Pressure: ambient Pa / Temperature: 290 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
---|
-
Processing
NMR software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: torsion angle dynamics / Software ordinal: 5 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 50 / Conformers submitted total number: 20 |