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- PDB-2c29: Structure of dihydroflavonol reductase from Vitis vinifera at 1.8 A. -
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Open data
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Basic information
Entry | Database: PDB / ID: 2c29 | ||||||
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Title | Structure of dihydroflavonol reductase from Vitis vinifera at 1.8 A. | ||||||
![]() | DIHYDROFLAVONOL 4-REDUCTASE | ||||||
![]() | OXIDOREDUCTASE / FLAVONOIDS / SHORT DEHYDROGENASE REDUCTASE / NADPH / DIHYDROQUERCETIN / ROSSMANN FOLD | ||||||
Function / homology | ![]() dihydroflavonol 4-reductase / dihydrokaempferol 4-reductase activity / flavanone 4-reductase / anthocyanin-containing compound biosynthetic process / nucleotide binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Petit, P. / Granier, T. / D'Estaintot, B.L. / Hamdi, S. / Gallois, B. | ||||||
![]() | ![]() Title: Crystal Structure of Grape Dihydroflavonol 4-Reductase, a Key Enzyme in Flavonoid Biosynthesis. Authors: Petit, P. / Granier, T. / D'Estaintot, B.L. / Manigand, C. / Bathany, K. / Schmitter, J.M. / Lauvergeat, V. / Hamdi, S. / Gallois, B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 152.1 KB | Display | ![]() |
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PDB format | ![]() | 120.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.6 MB | Display | ![]() |
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Full document | ![]() | 1.6 MB | Display | |
Data in XML | ![]() | 32.1 KB | Display | |
Data in CIF | ![]() | 47.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
NCS oper: (Code: given Matrix: (-0.03694, -0.99926, 0.01094), Vector: |
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Components
#1: Protein | Mass: 37694.344 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: ROSSMANN FOLD / Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.29 Å3/Da / Density % sol: 45.83 % |
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Crystal grow | pH: 7.5 / Details: NACL 80-200MM PEG 3350 25-30% HEPES 100MM PH 7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Mar 5, 2005 / Details: MIRRORS |
Radiation | Monochromator: SI (111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97319 Å / Relative weight: 1 |
Reflection | Resolution: 1.81→1.91 Å / Num. obs: 66981 / % possible obs: 98.9 % / Observed criterion σ(I): 2 / Redundancy: 5.3 % / Rmerge(I) obs: 0.07 / Net I/σ(I): 6.7 |
Reflection shell | Resolution: 1.81→1.91 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.59 / Mean I/σ(I) obs: 2 / % possible all: 98.1 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 28.43 Å2
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Refinement step | Cycle: LAST / Resolution: 1.81→16.43 Å
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Refine LS restraints |
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