- PDB-2bv7: Crystal structure of GLTP with bound GM3 -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2bv7
Title
Crystal structure of GLTP with bound GM3
Components
GLYCOLIPID TRANSFER PROTEIN
Keywords
LIPID TRANSPORT / GLYCOLIPID / LIGAND BINDING / ACETYLATION / TRANSPORT / GLYCOLIPID TRANSFER PROTEIN
Function / homology
Function and homology information
lipid transfer activity / ceramide transport / ceramide 1-phosphate binding / ceramide 1-phosphate transfer activity / ER to Golgi ceramide transport / glycolipid binding / intermembrane lipid transfer / lipid binding / cytosol Similarity search - Function
Glycolipid transfer protein domain / Glycolipid transfer protein superfamily / Glycolipid transfer protein (GLTP) / Glycolipid transfer protein, GLTP / Glycolipid transfer protein / Orthogonal Bundle / Mainly Alpha Similarity search - Domain/homology
Resolution: 1.79→52.2 Å / Cor.coef. Fo:Fc: 0.95 / Cor.coef. Fo:Fc free: 0.908 / SU B: 2.785 / SU ML: 0.09 / Cross valid method: THROUGHOUT / ESU R: 0.142 / ESU R Free: 0.149 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.257
974
5.2 %
RANDOM
Rwork
0.189
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obs
0.193
17930
99.4 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK