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Open data
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Basic information
Entry | Database: PDB / ID: 2bfv | ||||||
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Title | MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI | ||||||
![]() | (FV4155) x 2 | ||||||
![]() | IMMUNOGLOBULIN / FV FRAGMENT / STEROID HORMONE / FINE SPECIFICITY | ||||||
Function / homology | ![]() immunoglobulin complex / antigen binding / adaptive immune response / immune response / extracellular space Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Trinh, C.H. / Phillips, S.E.V. | ||||||
![]() | ![]() Title: Antibody fragment Fv4155 bound to two closely related steroid hormones: the structural basis of fine specificity. Authors: Trinh, C.H. / Hemmington, S.D. / Verhoeyen, M.E. / Phillips, S.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 55.9 KB | Display | ![]() |
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PDB format | ![]() | 43.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 746.6 KB | Display | ![]() |
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Full document | ![]() | 755.2 KB | Display | |
Data in XML | ![]() | 12.8 KB | Display | |
Data in CIF | ![]() | 16.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1bfvC ![]() 1cfvC ![]() 1nbvS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Antibody | Mass: 12437.998 Da / Num. of mol.: 1 / Fragment: MONOCLONAL ANTIBODY FV FRAGMENT Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Antibody | Mass: 13191.760 Da / Num. of mol.: 1 / Fragment: MONOCLONAL ANTIBODY FV FRAGMENT Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
#3: Chemical | ChemComp-STG / |
#4: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.14 Å3/Da / Density % sol: 60.8 % | ||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 8.5 Details: PROTEIN WAS CRYSTALLIZED FROM 15% (W/V) PEG 4000, 100MM NA ACETATE AND 50MM TRIS HCL PH 8.5 | ||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: Apr 1, 1995 / Details: MSC DOUBLE FOCUSING MIRRORS |
Radiation | Monochromator: NI FILTER / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→20 Å / Num. obs: 7836 / % possible obs: 86.9 % / Observed criterion σ(I): 3 / Redundancy: 1.5 % / Rsym value: 0.064 / Net I/σ(I): 7.21 |
Reflection shell | Resolution: 2.5→2.59 Å / Redundancy: 1.5 % / Mean I/σ(I) obs: 2.6 / Rsym value: 0.225 / % possible all: 87.5 |
Reflection | *PLUS Num. measured all: 12233 / Rmerge(I) obs: 0.064 |
Reflection shell | *PLUS % possible obs: 87.5 % / Rmerge(I) obs: 0.225 |
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Processing
Software |
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1NBV Resolution: 2.5→10 Å / σ(F): 0 Details: VAL L 56 HAS DIHEDRAL ANGLES WHICH LIE OUTSIDE THEIR EXPECTED RANGE IN THE GAMMA QUADRANT OF THE RAMACHANDRAN PLOT.
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Displacement parameters | Biso mean: 27.44 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.5→10 Å
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Refine LS restraints |
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Software | *PLUS Name: PROLSQ(CCP4) / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.176 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |