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Open data
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Basic information
Entry | Database: PDB / ID: 2ak2 | ||||||
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Title | ADENYLATE KINASE ISOENZYME-2 | ||||||
![]() | ADENYLATE KINASE ISOENZYME-2 | ||||||
![]() | PHOSPHOTRANSFERASE / NUCLEOSIDE MONOPHOSPHATE KINASE | ||||||
Function / homology | ![]() Interconversion of nucleotide di- and triphosphates / AMP metabolic process / ADP biosynthetic process / adenylate kinase / adenylate kinase activity / sperm mitochondrial sheath / ATP metabolic process / mitochondrial intermembrane space / mitochondrial inner membrane / phosphorylation ...Interconversion of nucleotide di- and triphosphates / AMP metabolic process / ADP biosynthetic process / adenylate kinase / adenylate kinase activity / sperm mitochondrial sheath / ATP metabolic process / mitochondrial intermembrane space / mitochondrial inner membrane / phosphorylation / mitochondrion / ATP binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Schlauderer, G.J. / Schulz, G.E. | ||||||
![]() | ![]() Title: The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments. Authors: Schlauderer, G.J. / Schulz, G.E. #1: ![]() Title: Movie of the Structural Changes During a Catalytic Cycle of Nucleoside Monophosphate Kinases Authors: Vonrhein, C. / Schlauderer, G.J. / Schulz, G.E. #2: ![]() Title: Isolation and Characterization of Two Types of Cdna for Mitochondrial Adenylate Kinase and Their Expression in Escherichia Coli Authors: Kishi, F. / Tanizawa, Y. / Nakazawa, A. #3: ![]() Title: Mitochondrial Adenylate Kinase (Ak2) from Bovine Heart. The Complete Primary Structure Authors: Frank, R. / Trosin, M. / Tomasselli, A.G. / Noda, L. / Krauth-Siegel, R.L. / Schirmer, R.H. #4: ![]() Title: Mitochondrial ATP:AMP Phosphotransferase from Beef Heart: Purification and Properties Authors: Tomasselli, A.G. / Noda, L.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 52.6 KB | Display | ![]() |
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PDB format | ![]() | 41 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 419.2 KB | Display | ![]() |
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Full document | ![]() | 422 KB | Display | |
Data in XML | ![]() | 11.3 KB | Display | |
Data in CIF | ![]() | 15.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 25540.504 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: PRECIPITANT AMMONIUM SULFATE / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
Compound details | THE SECONDARY STRUCTURAL ELEMENTS PRESENTED BELOW ARE FROM PROGRAM DSSP. FOR MANUAL ASSIGNMENTS ...THE SECONDARY STRUCTURAL |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.67 Å3/Da / Density % sol: 54 % |
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Crystal grow | *PLUS pH: 7.8 / Method: unknown |
Components of the solutions | *PLUS Common name: ammonium sulfate |
-Data collection
Diffraction source | Source: ![]() |
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Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: 1992 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→10 Å / Num. obs: 15064 / % possible obs: 92 % / Observed criterion σ(I): 0 / Redundancy: 5 % / Rmerge(I) obs: 0.05 |
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Processing
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Refinement | Resolution: 2.1→10 Å / σ(F): 0 / Details: RESIDUES SER 177 - ASP 179 SHOW WEAK DENSITY.
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Displacement parameters | Biso mean: 34 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.29 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→10 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |