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Open data
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Basic information
Entry | Database: PDB / ID: 2a8f | ||||||
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Title | beta-cinnamomin after sterol removal | ||||||
![]() | Beta-elicitin cinnamomin | ||||||
![]() | TOXIN / elicitin / sterol carrier protein / phytophthora / phytopathogen | ||||||
Function / homology | ![]() symbiont-mediated perturbation of host defense-related programmed cell death / symbiont-mediated killing of host cell / lipid transport / steroid binding / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Rodrigues, M.L. / Archer, M. / Martel, P. / Miranda, S. / Thomaz, M. / Enguita, F.J. / Baptista, R.P. / Melo, E.P. / Sousa, N. / Cravador, A. / Carrondo, M.A. | ||||||
![]() | ![]() Title: Crystal structures of the free and sterol-bound forms of beta-cinnamomin Authors: Rodrigues, M.L. / Archer, M. / Martel, P. / Miranda, S. / Thomaz, M. / Enguita, F.J. / Baptista, R.P. / Melo, E.P. / Sousa, N. / Cravador, A. / Carrondo, M.A. #1: ![]() Title: Structure of beta-cinnamomin, a protein toxic to some plant species. Authors: Rodrigues, M.L. / Archer, M. / Martel, P. / Jacquet, A. / Cravador, A. / Carrondo, M.A. #2: Journal: DNA Seq. / Year: 1998 Title: Identification of an elicitin gene cluster in Phytophthora cinnamomi. Authors: Duclos, J. / Fauconnier, A. / Coelho, A.C. / Bollen, A. / Cravador, A. / Godfroid, E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 100.6 KB | Display | ![]() |
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PDB format | ![]() | 79 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 425.3 KB | Display | ![]() |
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Full document | ![]() | 427.6 KB | Display | |
Data in XML | ![]() | 13.7 KB | Display | |
Data in CIF | ![]() | 20.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2aibC ![]() 1ljpS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 10299.760 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 43.2 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 7.5 Details: PEG 4000, Hepes buffer, MPD, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jun 15, 2003 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.933 Å / Relative weight: 1 |
Reflection | Resolution: 1.35→50.99 Å / Num. all: 39554 / Num. obs: 39554 / % possible obs: 97.1 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 4.9 % / Rmerge(I) obs: 0.065 / Net I/σ(I): 19 |
Reflection shell | Resolution: 1.35→1.38 Å / Rmerge(I) obs: 0.37 / Mean I/σ(I) obs: 2.9 / % possible all: 91.2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1LJP Resolution: 1.35→50.99 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 19 Å2 | ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.35→50.99 Å
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Refine LS restraints |
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