[English] 日本語
![](img/lk-miru.gif)
- PDB-230d: SOLUTION STRUCTURES OF UNIMOLECULAR QUADRUPLEXES FORMED BY OLIGON... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 230d | ||||||
---|---|---|---|---|---|---|---|
Title | SOLUTION STRUCTURES OF UNIMOLECULAR QUADRUPLEXES FORMED BY OLIGONUCLEOTIDES CONTAINING OXYTRICHA TELOMERE REPEATS | ||||||
![]() | QUADRUPLEXES DNA | ||||||
![]() | DNA / QUADRUPLEX / OXYTRICHA TELOMERE REPEAT | ||||||
Function / homology | DNA / DNA (> 10)![]() | ||||||
Method | SOLUTION NMR / SIMULATED ANNEALING, MATRIX RELAXATION | ||||||
![]() | Smith, F.W. / Schultze, P. / Feigon, J. | ||||||
![]() | ![]() Title: Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytricha telomere repeats. Authors: Smith, F.W. / Schultze, P. / Feigon, J. #1: ![]() Title: Quadruplex Structure of Oxytricha Telomeric DNA Oligonucleotides Authors: Smith, F.W. / Feigon, J. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 129.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 100.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 308.9 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 380.8 KB | Display | |
Data in XML | ![]() | 12.9 KB | Display | |
Data in CIF | ![]() | 18.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: DNA chain | Mass: 8801.531 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: CHEMICALLY SYNTHESIZED / ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|
-
Sample preparation
Details | Solvent system: H2O/D2O |
---|---|
Sample | Conc.: 0.002 M / Component: SODIUM CHLORIDE |
Sample conditions | Ionic strength: 0.1M / pH: 6.0 / Temperature units: K |
Crystal grow | *PLUS Method: other / Details: NMR |
-
Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR software | Name: ![]() | ||||||||||||
Refinement | Method: SIMULATED ANNEALING, MATRIX RELAXATION / Software ordinal: 1 Details: REFINEMENT PROCEDURE STEP (1) SUBSTRUCTURE EMBEDDING ON 80 STRUCTURES STEP (2) TEMPLATE FITTING AND REGULARIZATION BY SIMULATED ANNEALING (80 STRUCTURES) STEP (3) SIMULATED ANNEALING AND ...Details: REFINEMENT PROCEDURE STEP (1) SUBSTRUCTURE EMBEDDING ON 80 STRUCTURES STEP (2) TEMPLATE FITTING AND REGULARIZATION BY SIMULATED ANNEALING (80 STRUCTURES) STEP (3) SIMULATED ANNEALING AND ENERGY MINIMIZATION (80 STRUCTURES) STEP (4) RELAXATION MATRIX REFINEMENT ON THE BEST 7 OF 80 STRUCTURES | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 80 / Conformers submitted total number: 7 |